Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi453g00051 ATGGCGGGTTCGGAGGAGGTTTTCCCGTGGTTGAAATCGCTTCCGGTGGCGCCGGAGTATCGGCCGAGCGCGGCGGAGTTCCAAGATCCGATCGGTTACATTTTTAAGATCGAGAAAGAAGCATCAAAATACGGAATCTGTAAGATTATTCCTCCTGTTCCCCCTTCCCCTAAGAAAACCGCAATTTCGAACCTGAACCGGTCCCAACCCCGGTTCACCACACGACAGCAACAGATCGGGTTCTGCCCTCGGCGACCTCAACCGGTTCGGAGACCGGTCTGGCACAGCGGTCACCACTACTCGTTTCGCGACTTCGAGGCCAAAGCCAAAGCGTTCGAGAAAAGCTACCTCAAGAAAGGTAAAAAGTGCGCTTCAACGCTTTCCCCTCTCGAAGTGGAGACTCTGTATTGGAAGGCCACCGCTGATAAGCCCTTTTCTGTTGAGTATGCAAACGACATGCCAGGCTCTGCGTTTGCAGGACCAAACGACGGAGGTGGTGGTGGAGACAGCGTCGTAACTGTTGGCGAGACTGCGTGGAACATGAGAGCGGTTTCGAGGGCAAATGGTTCTCTGTTGAGGTTCATGAAGGAGGAGATTCCTGGAGTGACTTCACCTATGGTGTATGTTGCTATGTTATTTAGCTGGTTCGCTTGGCATGTGGAGGATCATGACTTGCATAGCTTGAATTACCTTCATATGGGTGCTCCAAAGACATGGTATGGCGTGCCTAGAGACGCAGCCGTTGCATTCGAGGAAGTTGTTAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACTACAGTGATGTCGCCGGAAGTATTCATTAGCGCGGGTGTTCCCTGCTGCAGTGGGCGTGTGGTGTGCCAAAGCAATTTCTCATGGTTCTTTGAAGGGAGCATTGACAGGCTTGCTGCAGCCTTCATGCTTGATTATGGGCAGTTTTCTGATATGCAGGGAGCCTTGACAGGCTTGCTGCATCCTTCATGCTTGATTAACTTATTAGTGCAAAATGCTGGGGAATTTGTGGTGACGTTTCCGAGAGCGTATCACACAGGATTTAGTCACGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATTAATTATCCTCCTATGGTTTCACATGTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAGTCCCTGGAGGCATGAGCACTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGTAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGTTACGGAATAATGATCTGCTTCACGTACTCGGAAAAGGATCTTCTATAGTACTTCTTCCTCGTAGCTCTTCTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCTCAACAACTAAAAGTGAACACTGAGTTTTCTCTCAATGAATGCAATTCTGAGGGAATGAATTCCTCAAAAGGGTTTGTTCATTCAGTGCGAATGCCTAGAGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGACCGTTGGTTCTGGAGTAACTAGCAATAAATTTACTGTTGCCCATGAAGATGCAAGTATTCCCAAACCCAGCACATATACAGGCAGTTCTATCAGTTCTGGATGGACAAAACAGAATGCTGGAAATGATGTATATGATGCTCTTGTTGAATCTATTGAACAACAGACACAGATTGCTGATCATAATTCCAAGGAGGATTTAAATACTGAAAGAAAAAAAGGCAATACAGCTCTTGCACTATTGGCTTCGGCATATGGAAATTCTTCCGACTCTGAGGAAGATCAGGGTGACTCAGATATTGCAGCTGACGGTGATGAATTGAATGTGATGAAGCATCCATCAGCAAGTAGATCTCAGGAGATACCTTGTTTGCCTTCTCAATTTCAAGATTACCATGGTAGTCCCATTGTTAGACTTGATGGAGATGATAGTCCTTCGGAGAGTATTGGCAATTATGAGTATTATATGCATAAGAGAGTTGAGCGCATTATGAGCCCGTTTGACTACTCTGTTAAGTCAGAAGATTGTAACATCACTTCAGGGGGAGCATTTAAAAATAACAGGGCAGTACCTTATTCCACCATGAATTGTTCTCAAGATACTCATGCTGTAACGTCATTGATGGGCAAGACTGCGATTCCCATTGACAATAAAAATGTTTCATTGGGGGCACCATCTGATGAAGACTCGTCTAGAATGCATGTCTTCTGTCTAGAGCACGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGAGGTGCCCACATATTGCTCCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCAAAGTTTATGGCAGAAGAATTGGGGATTGATTACATGTGGAAGAATACTGTATACAGGCATGCCAACAGGGAAGATGAGGAGAGGATCCAATCATCTCTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGCGCCAATCTTAGCCGCTCTCCACTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCATTTGGTCGTAGCACTCCATCAAGCTCTCCCATAGAACCCAAGGTCTATCAGAGAAGGGCTAACAAACAGAAAAAGGTAGTTGCTGGGAAATGGTGCGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTATTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGTCATTACCTGATGAGAAACTTGAGAGATCAGAAATTACCCACAAAAGCAATACTACAATTAAAAAATCTGGTAGGAAAAGGAAAATGACTGTGGAGAGTGGAGAAGCCAGGGAAGGAAGTATTGCTGAGAGAGATTGGCTATCAGATGATTCAATTGAAGATAAATCCAATCAATCTCGAAGGAAGATTCTTCGAAGTAAGCGAACCAGGCATATTGAGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTCTGCAGCATCATAGAAAGCCTATAAGCAAGCGTGCAAAATGCATTGAAAGTTCAGTTTCAGATGATTCACTGGATGATAATACTCATATACAGCATTGGAGGAAGGCTAATGCCAAGGAAGCTAAATTTATTGACAGTGATGTGGTTTCAGATGACACAATGGACTATGATTCTGATTGGGCACAGAGGGGAGAGCTTAGCGACAAGCAAGATGTTTTTTCAGAAGACTCATTGGATGTTGGTTCTCTTCAGCTGCAAAGAAAGACTCCTAAAAGCAAGTATGATCAATACATTGCCGAAGAAGATGTGATTTCTAATGATGAAACAGAAGTTTATTTTCAGAAGCAGAAAGGGAGGATATCTAAAAGTAGGAATCACAAATTCCTTTCTGAAAAAGAGACAGTGATATCTGATGACCAACTGGAGCACCACATGCAGAAGCAGCAACAGAGGCATCCTAAAAGCAGGCAAGACAAATACCTTGCTGGAGAGAATATTATATCTGATGATCAACTGGAGGGTCATTGTCGCAAGTATCAAAGAAGGATTCCTAAAGACAGGCAAGCCAAATGTGTTACTGGGGAAGATGTAGTGTCTGATGACCAGTTGGATGATCACTTTCAGAAGCCCCAAAGGAATGTTCGAAGGAGCAGGCAAAATAAATACAATGATAGAGAAGTTGTGGATGACTCGACTGAAAATAATTCTCATCTGTTGTACAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGATGAAGACTCTGTAAATTCAGATGATCAAGTAGAGGATGATTCTCATCAGCAACACAGGAGAACTCTTCGAAGTAAGCAATCTAAACCACAACTACAGACTCTTAAACATATGAAACAAGCTAACCCTCTCCGTGTGAGAAGCAAGACATCCCGGCCTGTGAAACGAGGTGCTCTTAAGCTAATGAAATCAAAGGCTCCTCGGCAAATGAAGCAGCAGCCTTGTGTATGGAATAGTCAATCTGGTAACTCCAGAGACGAGACTTTACATATTGAAGAGGAGGAAGAAGGTGGACCTAGCACAAGGCTTAGGAAGAGAGTTCCGAAAATTCAGAAGGAATCTGAAGGAAAATCAAAAGAGAAGGAAACCAAAAAGAAAAAAGTGAAGAATGCCACAGCTGCAAAGGTTTCAGCTGGCCGGGCCAAAGTGAAGGATGAGGAAGGTGAATACCAGTGTGACATTGAGGGGTGTAACATGAGTTTTGGGTCTAAACAGGAGCTGGTGCATCATAAGAGAAATATCTGTCCTGTGAAAGGATGTGGAAAGAAATTTTTCTCACACAAATATCTGGTGCAGCACCGACGAGTTCATGAGGATGACCGTCCCCTGAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAACATATTCGAGTCCACACTGGTGCTCGTCCATATGTATGTGCTGAGACAGGGTGTGGGCAAACCTTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAACAAAGAAGAATCGTTGA 4650 0.4394 MAGSEEVFPWLKSLPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPVPPSPKKTAISNLNRSQPRFTTRQQQIGFCPRRPQPVRRPVWHSGHHYSFRDFEAKAKAFEKSYLKKGKKCASTLSPLEVETLYWKATADKPFSVEYANDMPGSAFAGPNDGGGGGDSVVTVGETAWNMRAVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCSGRVVCQSNFSWFFEGSIDRLAAAFMLDYGQFSDMQGALTGLLHPSCLINLLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHVQLLYDLGLALCSRVPGGMSTEPRSSRLKDKRKGVGETVIKELFVQDVLRNNDLLHVLGKGSSIVLLPRSSSDISVCSKLRVGSQQLKVNTEFSLNECNSEGMNSSKGFVHSVRMPREPAARYLMSADCSFFNDWTVGSGVTSNKFTVAHEDASIPKPSTYTGSSISSGWTKQNAGNDVYDALVESIEQQTQIADHNSKEDLNTERKKGNTALALLASAYGNSSDSEEDQGDSDIAADGDELNVMKHPSASRSQEIPCLPSQFQDYHGSPIVRLDGDDSPSESIGNYEYYMHKRVERIMSPFDYSVKSEDCNITSGGAFKNNRAVPYSTMNCSQDTHAVTSLMGKTAIPIDNKNVSLGAPSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFMAEELGIDYMWKNTVYRHANREDEERIQSSLDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRSTPSSSPIEPKVYQRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKSLHGWSLPDEKLERSEITHKSNTTIKKSGRKRKMTVESGEAREGSIAERDWLSDDSIEDKSNQSRRKILRSKRTRHIERDDTASEGDYSPLQHHRKPISKRAKCIESSVSDDSLDDNTHIQHWRKANAKEAKFIDSDVVSDDTMDYDSDWAQRGELSDKQDVFSEDSLDVGSLQLQRKTPKSKYDQYIAEEDVISNDETEVYFQKQKGRISKSRNHKFLSEKETVISDDQLEHHMQKQQQRHPKSRQDKYLAGENIISDDQLEGHCRKYQRRIPKDRQAKCVTGEDVVSDDQLDDHFQKPQRNVRRSRQNKYNDREVVDDSTENNSHLLYRTPKRKQAKCMDEDSVNSDDQVEDDSHQQHRRTLRSKQSKPQLQTLKHMKQANPLRVRSKTSRPVKRGALKLMKSKAPRQMKQQPCVWNSQSGNSRDETLHIEEEEEGGPSTRLRKRVPKIQKESEGKSKEKETKKKKVKNATAAKVSAGRAKVKDEEGEYQCDIEGCNMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAETGCGQTFRFVSDFSRHKRKTGHSTKKNR 1549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi453g00051 1549 Gene3D Classic Zinc Finger 1455 1541 - -
Sebi453g00051 1549 ProSiteProfiles Zinc finger C2H2 type domain profile. 1457 1486 IPR013087 -
Sebi453g00051 1549 ProSiteProfiles JmjC domain profile. 176 392 IPR003347 -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 957 990 - -
Sebi453g00051 1549 FunFam Probable lysine-specific demethylase ELF6 1484 1513 - -
Sebi453g00051 1549 SMART cupin_9 173 392 IPR003347 -
Sebi453g00051 1549 ProSitePatterns Zinc finger C2H2 type domain signature. 1459 1481 IPR013087 -
Sebi453g00051 1549 ProSiteProfiles Zinc finger C2H2 type domain profile. 1487 1516 IPR013087 -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 1370 1413 - -
Sebi453g00051 1549 SUPERFAMILY beta-beta-alpha zinc fingers 1473 1515 IPR036236 -
Sebi453g00051 1549 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1483 - -
Sebi453g00051 1549 ProSitePatterns Zinc finger C2H2 type domain signature. 1519 1543 IPR013087 -
Sebi453g00051 1549 ProSiteProfiles Zinc finger C2H2 type domain profile. 1517 1548 IPR013087 -
Sebi453g00051 1549 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 973 990 - -
Sebi453g00051 1549 Pfam JmjC domain, hydroxylase 341 374 IPR003347 -
Sebi453g00051 1549 Pfam JmjC domain, hydroxylase 206 293 IPR003347 -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 1278 1305 - -
Sebi453g00051 1549 SMART JmjN_1 16 57 IPR003349 -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 1017 1037 - -
Sebi453g00051 1549 FunFam Probable lysine-specific demethylase ELF6 1514 1543 - -
Sebi453g00051 1549 Gene3D Cupin 10 396 - -
Sebi453g00051 1549 Pfam jmjN domain 18 51 IPR003349 -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 1355 1369 - -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 1235 1417 - -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 1005 1044 - -
Sebi453g00051 1549 ProSitePatterns Zinc finger C2H2 type domain signature. 1489 1511 IPR013087 -
Sebi453g00051 1549 SUPERFAMILY Clavaminate synthase-like 189 400 - -
Sebi453g00051 1549 MobiDBLite consensus disorder prediction 1235 1265 - -
Sebi453g00051 1549 SUPERFAMILY beta-beta-alpha zinc fingers 1505 1539 IPR036236 -
Sebi453g00051 1549 SMART c2h2final6 1517 1543 IPR013087 -
Sebi453g00051 1549 SMART c2h2final6 1487 1511 IPR013087 -
Sebi453g00051 1549 SMART c2h2final6 1457 1481 IPR013087 -
Sebi453g00051 1549 SMART c2h2final6 1434 1456 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi453g00051 Sebi-Chr453 822554 831272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi453g00051 769 870 C2H2 Transcription Factor Family AT5G04240 32.353 1.63e-13 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi453g00051 JmjC 8.8e-19 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi453g00051 - - gmx:100775813 1667.51