Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi453g00042 ATGGCTTTATCCCCTCATAAATCCCACCTCTTAATCTTTCCATTCTTCTTCTTGCTCATTCATGCCAAACTAGACCTCCACCCTTCAGACCTCAAAGCTCTCACAACTGTCCTAAAACACATTGGACTGGGAGTCAACGGTCAACTCCACCCATGTAACACAGAGGGTGTGTTCTGTGAGAGGAGACTCTCCAACAACGAGAGCTATGTTCTAAGGGTCACCAGGCTCATCTTCAACTCCAAGAACCTCAATGGGGTTCTCTCCCCTGCAATTGGGAACCTCTCCGAGCTCAAAGAACTCTCTTTTTCCAACAACCAGCTCGTTGACCAAATACCCTTCCATATCGTTGACTGCAGGAAGCTCGAAATCCTAGACCTCAGAAACAACCAATTATCAGGGAATGTTCCACCTGAGCTTTCTTCTCTCATTCGCCTTAGAATCCTTGATATCTCTTCCAACAAGCTTTCTGGAAACTTAAACTTCTTGAAGTATTTTCCCAACTTGGAAAGTCTCTCTGTGGCTGAAAATCTCTTCACAGGGAAAATTCCATCATCTATTCGTTCCTTTCGCAATCTTAGACACTTCAACTATTCCGGGAACCGTTTCCTTGAAGGCTCTGTGCCATTGGTGAGGCTAGAAGGGTCAGGGTCAGCATCAGAATCAGATGTAATCCCCAAAAGGTTCATCCTTTCTGAGACTCCAGCTGAAAGAATGAAAAGATACACAGCTCCTGCACCTGCTCTGAAACCCAGTAAGAGTAATGGCCCTGCTCAAGCTCCTGCTCCAACAAGAGCAACCCACAAGCACAAGCATAAATCGAGCAAGAGGAAACTTGCTGGTTGGATTGTTGGTTTTGTAGCTGGGGCACTAGGTGGGATCTTATGTGGGCTAATATTTTCTTTGCTGTTCAAGCTGGCCATGGCTGTTATCAAAGGGGGTAGGAAGACCTCAGGGCCTGCAATTTTCAGTCCTTTGATTAAGAGAGCAGAGGACTTGGCTTTCTTAGAGAAAGAAGATGGACTAGCTTCATTGGAGATCATTGGAAGTGGTGGCTGTGGAGAAGTTTACAAGGCTGAATTACCAGGAAGCAATGGCAAGATGATTGCTATAAAGAAAATTGCTCAACAACTTCAAAGGGATGCAGCAGAATTAGCTGAAGAAGCCAGCAAGCTTTTGAGCAAAAAGATGCGTCAAATTCGATCAGAGATCAACACAGTTGGTCAAATTCGACACCGCAATCTCCTACCCTTGCTGGCTCATATGTCCAAGCCTGATTGCCACTATCTTGTCTATGAATATATGAAGAATGGAAGTCTGCAAGGAAAGCTTCCTTCTGATGACTTTTTCCTGCAAACTGACGAAATGAGTTTGGTCAAGTGGATGAGAAATGTGATGGCGTCAGAAAATCCCAAGCGAGCAATTGATACAAAGCTCATAGGCAATGGATACGAGGAACAAATGCTTCTGGTTTTAAGGATTGCCTGCTTCTGTACTTTAGATGATCCAAAGGAAAGGCCTAATAGTAAGGATGTTAGGTGCATGTTGGCCCAAATCAACCACTGA 1563 0.4459 MALSPHKSHLLIFPFFFLLIHAKLDLHPSDLKALTTVLKHIGLGVNGQLHPCNTEGVFCERRLSNNESYVLRVTRLIFNSKNLNGVLSPAIGNLSELKELSFSNNQLVDQIPFHIVDCRKLEILDLRNNQLSGNVPPELSSLIRLRILDISSNKLSGNLNFLKYFPNLESLSVAENLFTGKIPSSIRSFRNLRHFNYSGNRFLEGSVPLVRLEGSGSASESDVIPKRFILSETPAERMKRYTAPAPALKPSKSNGPAQAPAPTRATHKHKHKSSKRKLAGWIVGFVAGALGGILCGLIFSLLFKLAMAVIKGGRKTSGPAIFSPLIKRAEDLAFLEKEDGLASLEIIGSGGCGEVYKAELPGSNGKMIAIKKIAQQLQRDAAELAEEASKLLSKKMRQIRSEINTVGQIRHRNLLPLLAHMSKPDCHYLVYEYMKNGSLQGKLPSDDFFLQTDEMSLVKWMRNVMASENPKRAIDTKLIGNGYEEQMLLVLRIACFCTLDDPKERPNSKDVRCMLAQINH 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi453g00042 520 Coils Coil 367 402 - -
Sebi453g00042 520 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 68 159 - -
Sebi453g00042 520 Gene3D Phosphorylase Kinase; domain 1 332 432 - -
Sebi453g00042 520 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 440 518 - -
Sebi453g00042 520 ProSiteProfiles Protein kinase domain profile. 341 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi453g00042 520 SUPERFAMILY Protein kinase-like (PK-like) 329 464 IPR011009 -
Sebi453g00042 520 SUPERFAMILY L domain-like 70 209 - -
Sebi453g00042 520 Gene3D Ribonuclease Inhibitor 33 161 IPR032675 -
Sebi453g00042 520 Gene3D Ribonuclease Inhibitor 162 219 IPR032675 -
Sebi453g00042 520 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515
Sebi453g00042 520 MobiDBLite consensus disorder prediction 244 273 - -
Sebi453g00042 520 Pfam Protein kinase domain 344 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi453g00042 520 Gene3D Transferase(Phosphotransferase) domain 1 433 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi453g00042 Sebi-Chr453 593179 595089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi453g00042 441 520 Receptor kinase-like Gene Family AT2G31880 73.750 3.61e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Sebi453g00042 Pkinase 5.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi453g00042 - - qsa:O6P43_022621 563.533