Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi453g00040 ATGCCTTCCTTCAAGTCCCTCACAGTGGCGGAATCGTGCCTTCTCTCTCAACCCTCACTCTTCCACACCAAAACTAAACACCCATTTACCTCAATTTCCTTTAAGCCCCTCAAGCTGCACCACCAATTACCATCACCCTCTCTCCCCCTCTCCAAGAGGACTTCCTCTCTCCTCACATTTGTAGCACAGACTTCGGATTGGGCTCAACAAGAAGGAGAAAAGGAAGAAGATGGAACCCTATGGGAGAACCAAGGGGAACCCACATGGGGAAATGAAGATGCTGATGAAACCGAAGGAAACGAGGATGGTGAAGGTGAGATTTTTGGTGATGGGGGTTATGCTGAGCCATCTGAAGATTTGAAGATCTTTGTTGGGAACTTGCCATGGAATGTTGACAGTGAGAGATTGGCCATGCTTTTTGAGCAGGCTGGGACTGTGGAGGTTGCTGAGGTTATTTATAATAGGGCCACAGACCGAAGTCGTGGGTTTGGATTTGTAACCATGAGCACAGTTGAAGAAGTTGAGAAGGCTGTGGAGAAGTTCAGTGGCTATGAATTGGATGGAAGATCGTTGACTGTTAATAAGGCTGCTCCAAGAGGAACACAGCCTGAACGCCCACCACGTGCCTCTGATGGTGGTTTAAAAATCTATGTTGGTAACTTGCCATGGGATGTTGACAATGCTCGCCTGGAGCAACTTTTCAGTGAACATGGTAATGTTGACAATGTCCGGGTAGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGCCTTTGTCACAATGTCCAGTGAGGCTGATACAAATAATGCCATTGCTGCTCTTGATGGTCAGAACTTGGACGGGAGGTCTATCAGAGTGAATGTTGCTGAGGAAAGGCCCAGGCGTAGCTTTTGA 897 0.4771 MPSFKSLTVAESCLLSQPSLFHTKTKHPFTSISFKPLKLHHQLPSPSLPLSKRTSSLLTFVAQTSDWAQQEGEKEEDGTLWENQGEPTWGNEDADETEGNEDGEGEIFGDGGYAEPSEDLKIFVGNLPWNVDSERLAMLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTVEEVEKAVEKFSGYELDGRSLTVNKAAPRGTQPERPPRASDGGLKIYVGNLPWDVDNARLEQLFSEHGNVDNVRVVYDRETGRSRGFAFVTMSSEADTNNAIAALDGQNLDGRSIRVNVAEERPRRSF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi453g00040 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Sebi453g00040 298 MobiDBLite consensus disorder prediction 192 212 - -
Sebi453g00040 298 MobiDBLite consensus disorder prediction 89 105 - -
Sebi453g00040 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Sebi453g00040 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Sebi453g00040 298 SUPERFAMILY RNA-binding domain, RBD 117 212 IPR035979 GO:0003676
Sebi453g00040 298 SUPERFAMILY RNA-binding domain, RBD 205 296 IPR035979 GO:0003676
Sebi453g00040 298 SMART rrm1_1 121 194 IPR000504 GO:0003723
Sebi453g00040 298 SMART rrm1_1 215 288 IPR000504 GO:0003723
Sebi453g00040 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Sebi453g00040 298 MobiDBLite consensus disorder prediction 66 111 - -
Sebi453g00040 298 Gene3D - 61 203 IPR012677 -
Sebi453g00040 298 Gene3D - 204 297 IPR012677 -
Sebi453g00040 298 CDD RRM2_NsCP33_like 215 290 - -
Sebi453g00040 298 CDD RRM1_PSRP2_like 121 200 - -
Sebi453g00040 298 PANTHER OS02G0815200 PROTEIN 24 296 - -
Sebi453g00040 298 FunFam 31 kDa ribonucleoprotein, chloroplastic 204 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi453g00040 Sebi-Chr453 573831 576045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi453g00040 122 296 Eukaryotic Initiation Factors Gene Family AT3G16380 33.696 1.49e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi453g00040 - - gmx:100811487 358.607