Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi450g00009 ATGGCAGAACTCGATCTAATCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAGGTTCTTGGTGAAGGTACCTATGGTGTCGTATACAAAGCCATTGATACCCAGACAGGACAGACGGTTGCAATTAAGAAGATTCGGCTTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTTCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATTAGAGACCGGAATATTTTCCTTTCACCAGGCGATATAAAATCTTACCTTCAAATGACGCTTAAAGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGACCGCAGGTTTACTCATCAGGTGTTTGCTCGATGGTATAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTTCAGGAGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTACTTCTACGTCGACCCTTTTTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGTAGCATTTGGAACTCCATCACCTTCTCAGTGGCCTGATATGGTATATCTTCCTGATTATGTTGAATACCAATTTGTTCCTGCCCCCACTTTGCGTTCTTTATTTCCAATGGCAAGTGAAGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGCGCAGCAGGCATTAGAGCACAGGTACTTCTCTTCTGCACCACTGCCTACTGTTCCAGATAAGCTTCCAAGACCTGCCCCTAAGAAGGAGTCTAGGGCTTCAGATTTCAATTCACATGAGGGTCCCACTGTCTTATCACCTCCAAGAAAGTCCAGGAGAGTGATGCCAGAGCGTGATGGGTTTGAAGGCAATTCTATGCAAGGAGATAAGATTGATGATAATATTGGTAATTTCAGACAGACAGTTGGTGATAATACAGGCAAGAATGAGCCTGCACCAATGTCACTAGACTTTTCTCTCTTTGGATTAAAACCTCCAAATAGACCAACAATTACCAGTCATGACTCATCACTCATGACTAATTTTGTGAAGGCAATGCTTTCTACCAAATGGAATCTCAAGGCTGAGTATAAAATTTTGCTAAATTTAAGTGGTGGAGCAATGTGA 1299 0.4111 MAELDLIKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFVAFGTPSPSQWPDMVYLPDYVEYQFVPAPTLRSLFPMASEDALDLLSKMFTYDPKARISAQQALEHRYFSSAPLPTVPDKLPRPAPKKESRASDFNSHEGPTVLSPPRKSRRVMPERDGFEGNSMQGDKIDDNIGNFRQTVGDNTGKNEPAPMSLDFSLFGLKPPNRPTITSHDSSLMTNFVKAMLSTKWNLKAEYKILLNLSGGAM 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi450g00009 432 FunFam Cyclin-dependent kinase D-1 5 94 - -
Sebi450g00009 432 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Sebi450g00009 432 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Sebi450g00009 432 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi450g00009 432 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Sebi450g00009 432 MobiDBLite consensus disorder prediction 300 359 - -
Sebi450g00009 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Sebi450g00009 432 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi450g00009 432 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Sebi450g00009 432 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi450g00009 432 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Sebi450g00009 432 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Sebi450g00009 432 MobiDBLite consensus disorder prediction 335 350 - -
Sebi450g00009 432 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi450g00009 Sebi-Chr450 283681 288850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi450g00009 8 401 Core Cell Cycle Gene Families AT1G73690 75.381 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Sebi450g00009 Pkinase 1.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi450g00009 K02202 - gmx:100814263 735.717