Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi450g00005 ATGGATATCGAGGAGGACACCCGTTCTCTGCAGCTTGAATCAGCAGAAGACAATTATGGGGTTGTCAGTCCAGATGATGGAAGGACAGAAGAAGTGGAGGAATCTATTAAGATGGATGAAGATTCAAAGCAGGAGGTTCAGGCACAGCCTGTCCAGGCTGAGCCAAAAGATAAGGAAATTCCTCCTGTGCAAGATGAAGAAGATGAGTTGGAGTTAAATAACAAAAGACACTTGAATGTCGTGTTTATTGGTCATGTGGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAATATGAGAAAGAAGCAAAAGACAAAAGTAGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAGAGTTATGTTCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTCATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGTGTGTCTAAGCTGCTTGTTGTTGTCAATAAAATGGACGATCCTACAGTGAAGTGGTCAAAAGAAAGATATGATGAAATTGAGTCAAAGATGATACCATTTTTGAAGCAATCAGGTTATAATGTGAAGAAAGATGTTCTCTTTTTACCAATATCTGGGCTGATTGGTTCAAACCTAAAAACAAGATTGGAAAAAAGCATATGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACGCTATTGAAGTTCCTCAACGAGATCCCAAAGGTCCTTTCAGGATGCCTATACTTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTGTTCGTGAGGGAGATTCCATGTTGGTTATGCCAAATAAGGATCAAGTGAAAGTTGTTGCGATATTTATTGATGAGAATCGGGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATCAGATTATCTGGTGTTGAAGAAGAAGACATACTAACTGGGTTTGTCCTGTCTAGTATTGAGAGACAACTAGCATGTGACAGGTCTTCTGGCAGTGGGCTTCTGGGATTGGGCCAAGCTGCCTCTGACGGTCCTGGTCGGCAGAGGAAGTATAGTGATGAACTGGTTGTGGAACATATGGTGAAACAGCAGGAGAGGTTATTCCAGCAAATCCAATACCAGCTGTTACTGAGTTTGTTGCCTCAGCTGGCAATCCTTGAATTGTTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCATACATCAAATTGATCCAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTCTTCGTGAAGAATGGTGCAGGTGTTGTGTGCCGAATTCAGGTTAGTAACTCGGTATGCATTGAGAAATTCTCTGATTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTTGCAGTGGGAAAAGTCACTGGTCTTTAA 1653 0.4204 MDIEEDTRSLQLESAEDNYGVVSPDDGRTEEVEESIKMDEDSKQEVQAQPVQAEPKDKEIPPVQDEEDELELNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVKWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGSNLKTRLEKSICPWWDGPCLFEALDAIEVPQRDPKGPFRMPILDKFKDMGTVVMGKVESGTVREGDSMLVMPNKDQVKVVAIFIDENRVKRAGPGENLRIRLSGVEEEDILTGFVLSSIERQLACDRSSGSGLLGLGQAASDGPGRQRKYSDELVVEHMVKQQERLFQQIQYQLLLSLLPQLAILELLDNAIFTAGYKAVLHIHSVVEECEVIELIHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSVCIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi450g00005 550 MobiDBLite consensus disorder prediction 1 69 - -
Sebi450g00005 550 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 56 299 - -
Sebi450g00005 550 PANTHER TRANSLATION FACTOR 67 548 - -
Sebi450g00005 550 Pfam Elongation factor Tu C-terminal domain 450 549 IPR004160 -
Sebi450g00005 550 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 303 389 - -
Sebi450g00005 550 PRINTS GTP-binding elongation factor signature 79 92 IPR000795 GO:0003924|GO:0005525
Sebi450g00005 550 PRINTS GTP-binding elongation factor signature 174 185 IPR000795 GO:0003924|GO:0005525
Sebi450g00005 550 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Sebi450g00005 550 PRINTS GTP-binding elongation factor signature 218 227 IPR000795 GO:0003924|GO:0005525
Sebi450g00005 550 FunFam Putative translation elongation/initiation factor family protein 443 550 - -
Sebi450g00005 550 Pfam Elongation factor Tu domain 2 319 385 IPR004161 GO:0005525
Sebi450g00005 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 310 IPR027417 -
Sebi450g00005 550 CDD EF1_alpha 79 300 - -
Sebi450g00005 550 CDD eRF3_C_III 452 550 - -
Sebi450g00005 550 Gene3D Translation factors 447 550 - -
Sebi450g00005 550 Gene3D Translation factors 304 389 - -
Sebi450g00005 550 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 75 304 IPR000795 GO:0003924|GO:0005525
Sebi450g00005 550 MobiDBLite consensus disorder prediction 23 44 - -
Sebi450g00005 550 SUPERFAMILY Translation proteins 298 389 IPR009000 -
Sebi450g00005 550 CDD eRF3_II 306 387 - -
Sebi450g00005 550 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Sebi450g00005 550 Pfam Elongation factor Tu GTP binding domain 75 277 IPR000795 GO:0003924|GO:0005525
Sebi450g00005 550 Gene3D - 58 300 IPR027417 -
Sebi450g00005 550 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 458 549 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi450g00005 Sebi-Chr450 173208 190309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi450g00005 75 545 Eukaryotic Initiation Factors Gene Family AT5G60390 33.684 3.12e-87 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi450g00005 K03267 - gmx:100793653 845.114