Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi450g00002 ATGACTCTTCACACCGTTGATGATGATGACCACGACGATGATAACCTCTCCACCAGTGACGACGACGATGAAGGCCTCAAGGAAGACATGGCCGCTCTTGCACGAGCCTGCATGATCGCCGCACCTGCTGAACCTCACGAAGTTAACACCGAGGACCCACTCTTGCGCTCCGGCGACGCCCTCGTCCCTATCACTAACTACGAAGATTCCGTCGTCCCTGGTTCCAGCTCTGATAATGCCATCGTCCCCGTCACTACTGATTCTGATGACGATGACCTTGACACTCTCAAGAGAGTGCAGAGTCTCTATAAGCCTTTGGTTTCCTCTCAACCGATTATGACAATGCCAACAGTTTCTGATGGAGACGATGATGAGGATGACTTCGAGACAGTTCGGTCCATCTTCAAACGGTTTTCCACCTACGACAGAGGTTTCTCTGAAGGCAGGATGGAAAAATTGGCTGAGGGCGATCAGGGCTTGAGCCTAGATCGTGAGGACAACATTGCTGATAGCTCCATCTCACACAAATCAGATGCTGGTAAATTAAGTCCTGTTTCTCAGTCTCCTAATAATGACGTCAATTTTATGAATGGGGACATCGAAATGCCTGATGAGGCTTATGAGTCTGATGCCGGCGAGGCATCCAAATTACCACACAGAAAATCAAGCCTTCCTCCGGAAGCTCTGGCTATATTTGATGCCATCAAGAAGAATAGGGATCTCCAGAAATTTCTTAGAAATAAGATGATTGTGATGGAAGCGAAAATCGAGGAAAACAAACAGCTGATGGACAAACTTAAAATCCTTAGGGACTTTGAGATTTCTTGCAGTAGAAAAACAGGGAATGCCTTATCACTAAAAAAGGATCCTCGTGTTCAGTTAATATCAGCAAGAAAGAGTTTTGATCCAAATAACTCAAAGAGAGTATCTCCAATGTGGTATGGCCCAGCTGAGAATTCACGTGTCGCTAATTATAAGATGGTATTGGAAAGATTTCCACTTTCATTGGATAGGAAAAAATGGTCTAATGTGGAAAGGGAAAATCTTTCGAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAAACTTCACTAGATAGAATGAGTTTGGAGGGCTCATCTGGAGGTGCAAATGATATGGATAGTATATGCGCATCAGTTAAAGATCTTGAAATTACACCAGAGAGTATTAGAGAATTTTTACCTAAAGTTAACTGGGATCGGTTGGCTTCCATGTACGTTGTTGGCCATACTGGTGCTGAATGTGAATCTAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCATGGCCCATGGGCTCGTGAAGAGGATAGGTCTCTTTTGATTATTGTCCAAGATATGGGCATTAGGAACTGGTTTGATATTGCTGCGAAATTGGGCACAAACAGGACTCCATTTCAATGCTTGGCACGATACCAAAGGAGCTTAAATCCTTCAATGTTAAATAGTGAATGGACTGCTGAAGAAGATGCTCAACTTTGTTCTGCTGTTGAATTTTTTGGTGAAAGCAATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACGGGAACCCAATGCTCAAATAGATGGAAAAAGTCGCTTCGTCCTGTGAGGAAAGGGAGCTTTTCTCAAGAGGAAGATATGCGGTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAGTCTAATAGCTAAATTTGTTCCTGGACGAATCCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTCAAAATTAGAAGCTGCAATTGTCAAGCATGGATTTTGCTGGTCTAAGGTTGCTGCTGATGTGCCTCCCCGCACTGATTCTCAATGCCGGAAGAGATGGAAGGTGTTATTTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGGAGGAGGCAAAAGTCTCTTGTTCCTACTAACTTCGTTGATAGAGAATCTGAACGCCCAGCCCTTACACTGAATGACTTCCTTCCTATACAAACATTAGCTCCACCATCTGATGCTGATGCTTTGGATCTCCCTGGGAATCGTAAGAGGAAGTCAAGTAATGCTCCCAAGAAATCGAGGGCTAGAAAACGTGTGAAAAAGGTTCCAGATTGTCCCGAGGAAGTACAAGATATAGTAGTATACAGTGATGAGGTCAGAACTGGTTGTGAAGGTGTTCTGTCCCCCGATGTTCCCAAGAAAAGGAGATCCAAAAGACTTGCCAGAAGAGCTAGAGTTTGTCTCAATGACGCAGAGGAGATATCAGGTAGTGATGAGGTCAAGACTGGTAATGAGAGTTCGGAAATACAAGATACCGACAACATAACTCTTGCATGCTTTTTAAAGAACAAATCAAAGAAGAAAGGATTTAAATGTGCCAAAAATGTGAGCCTGGCTTCCTTTTCCTCTAGGACAACAATTGTATCTAAGCTGGTTGAAAATCAAACCCCATCTGTTGAGCAGGATGAGTTGTCTCTGCCATGTGGCACTGATGATGAAACTAAAAATTTGTTCATACAGCAGAATGGTGCTTCTCAGGGACAAGTGAGAAAGCCAGGAGATTCCACTACTAATTTGACCGGTGATGACGATGATATGACTCTTGCGTGCCTTATGGGAAACAAGGCAAAGAAATTGAATAAAACTACTAAAGGACGTAATGCACCATCTTCTTCCAAACTGAAAAAAGGATCTGCTTTACGTCGTGAAGTGCATGGTGGAAACAAGCCAACCATCATAGCTGATGGCAGTGGACCATCAATGTCAAAGCTTGCTGAAGAGGATACCGTTTTGCATGGTGATGTGACTGAACCCACAAACATGAATGTGGAAGAAGAAGATGACCTGCTTGCTTCCTTCCTGCAAAACAAGGCAAAGAAAAAGGGAGGACGACGCGATATTCTTAAAGGCAAATGTTAG 2958 0.4354 MTLHTVDDDDHDDDNLSTSDDDDEGLKEDMAALARACMIAAPAEPHEVNTEDPLLRSGDALVPITNYEDSVVPGSSSDNAIVPVTTDSDDDDLDTLKRVQSLYKPLVSSQPIMTMPTVSDGDDDEDDFETVRSIFKRFSTYDRGFSEGRMEKLAEGDQGLSLDREDNIADSSISHKSDAGKLSPVSQSPNNDVNFMNGDIEMPDEAYESDAGEASKLPHRKSSLPPEALAIFDAIKKNRDLQKFLRNKMIVMEAKIEENKQLMDKLKILRDFEISCSRKTGNALSLKKDPRVQLISARKSFDPNNSKRVSPMWYGPAENSRVANYKMVLERFPLSLDRKKWSNVERENLSKGIKQQFQEMVLQTSLDRMSLEGSSGGANDMDSICASVKDLEITPESIREFLPKVNWDRLASMYVVGHTGAECESRWLNCEDPLINHGPWAREEDRSLLIIVQDMGIRNWFDIAAKLGTNRTPFQCLARYQRSLNPSMLNSEWTAEEDAQLCSAVEFFGESNWQSVASVLERRTGTQCSNRWKKSLRPVRKGSFSQEEDMRLTVAVMLFGRKWSLIAKFVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDSKLEAAIVKHGFCWSKVAADVPPRTDSQCRKRWKVLFPEQVPLLQEARRRQKSLVPTNFVDRESERPALTLNDFLPIQTLAPPSDADALDLPGNRKRKSSNAPKKSRARKRVKKVPDCPEEVQDIVVYSDEVRTGCEGVLSPDVPKKRRSKRLARRARVCLNDAEEISGSDEVKTGNESSEIQDTDNITLACFLKNKSKKKGFKCAKNVSLASFSSRTTIVSKLVENQTPSVEQDELSLPCGTDDETKNLFIQQNGASQGQVRKPGDSTTNLTGDDDDMTLACLMGNKAKKLNKTTKGRNAPSSSKLKKGSALRREVHGGNKPTIIADGSGPSMSKLAEEDTVLHGDVTEPTNMNVEEEDDLLASFLQNKAKKKGGRRDILKGKC 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi450g00002 985 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 587 641 IPR017930 -
Sebi450g00002 985 ProSiteProfiles Myb-like domain profile. 432 484 IPR001005 -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 854 875 - -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 698 712 - -
Sebi450g00002 985 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 432 484 IPR017930 -
Sebi450g00002 985 CDD SANT 595 637 IPR001005 -
Sebi450g00002 985 ProSiteProfiles Myb-like domain profile. 485 536 IPR001005 -
Sebi450g00002 985 Gene3D - 540 590 - -
Sebi450g00002 985 Gene3D - 591 639 - -
Sebi450g00002 985 ProSiteProfiles Myb-like domain profile. 587 637 IPR001005 -
Sebi450g00002 985 SUPERFAMILY Homeodomain-like 488 582 IPR009057 -
Sebi450g00002 985 CDD SANT 543 586 IPR001005 -
Sebi450g00002 985 CDD SANT 492 536 IPR001005 -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 1 28 - -
Sebi450g00002 985 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 541 586 IPR017930 -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 682 714 - -
Sebi450g00002 985 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 975 - -
Sebi450g00002 985 SUPERFAMILY Homeodomain-like 566 638 IPR009057 -
Sebi450g00002 985 Gene3D - 434 484 - -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 893 933 - -
Sebi450g00002 985 SMART sant 591 639 IPR001005 -
Sebi450g00002 985 SMART sant 436 486 IPR001005 -
Sebi450g00002 985 SMART sant 540 588 IPR001005 -
Sebi450g00002 985 SMART sant 489 538 IPR001005 -
Sebi450g00002 985 SMART sant 337 433 IPR001005 -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 173 192 - -
Sebi450g00002 985 SUPERFAMILY Homeodomain-like 414 481 IPR009057 -
Sebi450g00002 985 Pfam Myb-like DNA-binding domain 440 501 - -
Sebi450g00002 985 Pfam Myb-like DNA-binding domain 541 584 IPR001005 -
Sebi450g00002 985 Pfam Myb-like DNA-binding domain 594 636 IPR001005 -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 12 27 - -
Sebi450g00002 985 ProSiteProfiles Myb-like domain profile. 540 586 IPR001005 -
Sebi450g00002 985 Gene3D - 491 539 - -
Sebi450g00002 985 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 485 540 IPR017930 -
Sebi450g00002 985 MobiDBLite consensus disorder prediction 171 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi450g00002 Sebi-Chr450 78498 84482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi450g00002 217 711 MYB-Related Transcription Factor Family AT3G18100 53.801 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi450g00002 Myb_DNA-bind_6 6.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi450g00002 K09422 - gmx:778073 1056.2