Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi44g00032 ATGGTCAAAGCAGTGGCAACAGAAGCACAAACTACATCTGCAAACCCTGCTGGCATGGATTTGGATTTACCAGTTGATCCAAATGAACCCACATACTGCTTTTGTAACCAAGTTAGCTATGGAGAGATGGTCGCCTGTGATAATCCTGATTGCAAAATAGAGTGGTTCCATTTTGGTTGTGTTGGTCTGAAAGAACAACCAAAAGGAAAATGGTACTGTTCAAATTGTGCAGCAACAAGAAATCGTCGGAGAGGGCCTTACAACTTTGCTTCTGTAGCTGTCATTGTTTGGCAAAATTTGAAATTACAAATTTCCAATGACTTTGTCATTTTAGTCTGTGGTACTGAGCCATCGAATGGCTCTCCTCCTCCATTATAG 378 0.4127 MVKAVATEAQTTSANPAGMDLDLPVDPNEPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCVGLKEQPKGKWYCSNCAATRNRRRGPYNFASVAVIVWQNLKLQISNDFVILVCGTEPSNGSPPPL 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi44g00032 125 CDD PHD_Yng1p_like 32 78 - -
Sebi44g00032 125 ProSitePatterns Zinc finger PHD-type signature. 33 76 IPR019786 -
Sebi44g00032 125 SMART PHD_3 32 77 IPR001965 -
Sebi44g00032 125 SUPERFAMILY FYVE/PHD zinc finger 21 79 IPR011011 -
Sebi44g00032 125 ProSiteProfiles Zinc finger PHD-type profile. 30 79 IPR019787 -
Sebi44g00032 125 PANTHER INHIBITOR OF GROWTH PROTEIN 9 80 IPR028651 -
Sebi44g00032 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 80 IPR013083 -
Sebi44g00032 125 FunFam Inhibitor of growth 2b 24 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi44g00032 Sebi-Chr44 676564 677124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi44g00032 26 76 PHD Transcription Factor Family AT3G14980 39.216 5.65e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi44g00032 - - cam:101508756 176.407