Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi448g00040 ATGGCGATTCCACCTCAAACGTTCCCAACCAGAAAACGACGACCCTCCGCGGAGTCGTTTATCTCTCCGAAGCTCACCGACCTCAACCTCCTTCAATCTCTGCTGCACCTCACTCACCAGATATGTTCCCTCAACCCAACCACAAGCCACTTCCTCCTCAGCCGCATTTCCTCCTCCACCATCCGCAAAACGCAGCTCCTTGGTGTCGTTTTCGAAGACCTGCTTCGCGTTTCGAATTCGACTAAAACTTCTTCAACCTCTCTCTGCTCCAACTCTCTCCTTCTCTGCCTTGAGGAAATGTACATCGTGCTGCACAGGATCAAAACCCTCGTTGAAGATTGCTTCAATGGAAGCAAATTCTCCATTCTCATGCAAATTGAAACCGTCGCCGACGCCTTCCACAAGCTCACTGGAGAGCTATCCACGCTTCTTGATATCTTTCCTCTTCAAGAGCTCGACCTAAACGATGACGTTCGGGAACTAGTTCTCCTCATCAGAAAACAGTGCTCCGAATCCAAGCCACTCCTCGAGGAGGAACAAATGGAACTCCGAAAAGAGGTCGTTTCCATTCTCGAAGGGATCAAGAGGGAGATTGTTCCCAATCAGACACACCTGGCTTCGATTTTCGAGAAATTGGAGATTCGAGATTCTTCCAGCTGCAGAGCGGAGATTGAGAATTTACATGAAGAGATTCAGAATCGGAGCGAAGAACAATCGAAATCAGAGATCGTAGCGTTGATCGGGCTAGTTAGATTCGCGAAGTGTGTTCTCTTCGGTGCTTCCACGCCATCGCCGGGAAGTGAGAGTCTCCAGCGGAAACCGTCGTTGGAGATTACGGTTCCGGCAGATTACCGTTGCCCGATAAGCCTTGAGCTGATGCGGGACCCTGTCGTCGTGGCAACAGGACAGACGTATGATCGTGTATCCATCAAGCTCTGGATGGAATCTGGGCACAACACGTGTCCCAAAACGGGTCAAACATTGGCCCACACTGACCTCATTCCCAATCACGCCCTCAGGAATATGATAGCCATGTGGTGCCGTGAGCAGAGAATCCCGTTCGAAGCGGAAACGGTAACTGGTAAAATCAACGGCGGCATAACAAACAAAACAGCTTTGGAAGCCACCCGAATGACGGCGTCATTTTTAGTCAACAAGCTCAAGGTTCCGTTAACGGTTTCCGTTCCGGATTATCAGTCGATGGAAGACACAAACGCCGTCGTTTACGAGCTTCGGGTTCTGGCGAAAACAGACTCAGACAGCAGAGCCTGCATCGCGGAAACTGGAGCCATCCCACTTCTGGTTCGGTACATCACCTCACATAACCCGAGCCTCCAGGTTAACTCCGTGACGACGATCTTGAACCTATCGATTCTTGAAGCGAACAAGGCGATGATAATGGACACTGATGGCGCGTTGAACGGCGTCGCGGAAGTGCTTCGTTCCGGCGCCACGTGGGAAGCGAAGGCGAACGCGGCGGCGACAGTGTTCAGTTTATCCGGTGTGGCCGCGTTCAGGAAGAGGCTCGGGAGGAAGGCACGTGTAATCAGCGGGTTGATTGAGCTCGCGAAGATTGGACCCGAGGGAGCAAAGAGGGACGCGCTCGCCGCGATTCTGAACCTTGCGGCGGACCGCGAGACAGTGGCGAGGTTGGTGGAGTGCGGCACGGTTGAAATGACGGCGCAGGTCATGGCCGCGATGCCAGAGGAGGCAGTGACGATCCTCGAAGCGGTGGTGAAGCGCGGCGGGCTGGTGGCAGTTGCGGCGGCTTACGTGGGGATCAAGAAGTTGGGGACGGTGTTGAGGGAGGGATCGGAGAGGGCGAGGGAGAGCGCTGCGGCGACGCTGGTGACTATGTGTAGGAAGGGTGGATCGGAGATTGTGGCAGAGCTGGCGGCGATTCCAGGAGTGGAGAGGGTGATTTGGGAGTTGATGGCTGTAGGGAGTGTGAGAGGGAGGAGGAAGGCGGCGACGCTGTTAAGGATTCTCCGGCGTTGGGCGGCTGGGTTGGACGGCGGCGAGAGTGAAGGGTTCTCAACTGCCACAGTGGTAAGTTCATCAACTACTGTGGTTATTCCAACAACCAGTTCGTTAGCACAGTGA 2103 0.5416 MAIPPQTFPTRKRRPSAESFISPKLTDLNLLQSLLHLTHQICSLNPTTSHFLLSRISSSTIRKTQLLGVVFEDLLRVSNSTKTSSTSLCSNSLLLCLEEMYIVLHRIKTLVEDCFNGSKFSILMQIETVADAFHKLTGELSTLLDIFPLQELDLNDDVRELVLLIRKQCSESKPLLEEEQMELRKEVVSILEGIKREIVPNQTHLASIFEKLEIRDSSSCRAEIENLHEEIQNRSEEQSKSEIVALIGLVRFAKCVLFGASTPSPGSESLQRKPSLEITVPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMESGHNTCPKTGQTLAHTDLIPNHALRNMIAMWCREQRIPFEAETVTGKINGGITNKTALEATRMTASFLVNKLKVPLTVSVPDYQSMEDTNAVVYELRVLAKTDSDSRACIAETGAIPLLVRYITSHNPSLQVNSVTTILNLSILEANKAMIMDTDGALNGVAEVLRSGATWEAKANAAATVFSLSGVAAFRKRLGRKARVISGLIELAKIGPEGAKRDALAAILNLAADRETVARLVECGTVEMTAQVMAAMPEEAVTILEAVVKRGGLVAVAAAYVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGESEGFSTATVVSSSTTVVIPTTSSLAQ 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi448g00040 700 SUPERFAMILY RING/U-box 270 353 - -
Sebi448g00040 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Sebi448g00040 700 PANTHER U BOX DOMAIN-CONTAINING 69 664 - -
Sebi448g00040 700 Pfam U-box domain 280 351 IPR003613 GO:0004842|GO:0016567
Sebi448g00040 700 Gene3D - 381 591 IPR011989 -
Sebi448g00040 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 358 IPR013083 -
Sebi448g00040 700 SUPERFAMILY ARM repeat 399 663 IPR016024 -
Sebi448g00040 700 Pfam Armadillo/beta-catenin-like repeat 419 457 IPR000225 GO:0005515
Sebi448g00040 700 FunFam RING-type E3 ubiquitin transferase 277 353 - -
Sebi448g00040 700 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Sebi448g00040 700 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Sebi448g00040 700 Coils Coil 221 241 - -
Sebi448g00040 700 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi448g00040 Sebi-Chr448 678566 680668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi448g00040 9 698 U-box Gene Family AT5G01830 54.755 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi448g00040 - - tpra:123922727 996.112