Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi448g00033 ATGAGTTGCAGTGAAAGGAACAAAGGAGGAGGAGAAGAGATGGAATGTGAAGAGAACAACTCTGTGGGATTGGAATCAAAATCAGTGAGGCATAACAATGGGTCAATTCCAAATCAACAAATAACAATTGATGAGAACCTTCTGGTTGACCCCAATTTGTTGTTTATTGGAGCAAAAATTGGCGATGGTGCTCATGGGAGAGTTTATAGAGGAAGGTATAGAGATGGAATTGTTGCTATTAAAGTTCTACATGATGGGAGCACTTCAGAAGAAAGAGCTATCCTTGAAAGTCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCAACATGAGAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCTCTGAAGGTGATTGTTACAGAGCTGTTACCAGGGATGTCATTGAGAAAATATTTGATCACTCTACGCCCTAAAACATTGGACCTTTTAGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCTATGGATTGGCTACATGCCAATGGGATCATACATAGAGATCTGAAACCTGACAATTTGCTACTTACAGCAAATCAGAAGTCAGTTAAACTTGCTGATTTTGGTATGGCAAGAGAAGAATCTCTGACTGAAATGATGACTGCGGAAACTGGAACTTACCGTTGGATGGCACCAGAGTTATACAGTACTGTAACATTGCGTCAAGGGGAGAAAACGCATTACAACAACAAGGTTGATGTCTACAGCTTTGGAATTGTTTTATGGGAGCTACTAACAAATCGCATGCCATTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGTTGCATTTAAGCAAGAGAGGCCTAACCTTCCAGGCGATATATCTCCTGATCTTGCCTTCATCATACAATCATGCTGGGTTGAAGATCCTAACCTGAGACCAAGCTTTAGTCAAATTATCCGCATGCTTAATGAATTTCTCTTAACACTCCAACAACCACCCCCTTCTTTGCCAGAACCTCACAAGGAACCTCAGGAGGAGGAGGCTACTTCTACCTGTGACAGAAGCAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCAAAGAGAACCAAAAACTAA 1095 0.4091 MSCSERNKGGGEEMECEENNSVGLESKSVRHNNGSIPNQQITIDENLLVDPNLLFIGAKIGDGAHGRVYRGRYRDGIVAIKVLHDGSTSEERAILESRFAREVNMMSRVQHENLVKFIGACKDPLKVIVTELLPGMSLRKYLITLRPKTLDLLVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGMAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKTHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAVAFKQERPNLPGDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNEFLLTLQQPPPSLPEPHKEPQEEEATSTCDRSKFAFLRHLFSSKRTKN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi448g00033 364 Pfam Protein tyrosine and serine/threonine kinase 56 315 IPR001245 GO:0004672|GO:0006468
Sebi448g00033 364 SUPERFAMILY Protein kinase-like (PK-like) 47 346 IPR011009 -
Sebi448g00033 364 FunFam Kinase suppressor of Ras 1 43 133 - -
Sebi448g00033 364 MobiDBLite consensus disorder prediction 325 347 - -
Sebi448g00033 364 ProSitePatterns Protein kinases ATP-binding region signature. 60 81 IPR017441 GO:0005524
Sebi448g00033 364 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Sebi448g00033 364 PRINTS Tyrosine kinase catalytic domain signature 242 264 IPR001245 GO:0004672|GO:0006468
Sebi448g00033 364 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Sebi448g00033 364 PRINTS Tyrosine kinase catalytic domain signature 168 186 IPR001245 GO:0004672|GO:0006468
Sebi448g00033 364 SMART serkin_6 54 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi448g00033 364 Gene3D Transferase(Phosphotransferase) domain 1 137 350 - -
Sebi448g00033 364 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 47 319 - -
Sebi448g00033 364 CDD STKc_MAP3K-like 60 315 - -
Sebi448g00033 364 ProSiteProfiles Protein kinase domain profile. 54 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi448g00033 364 MobiDBLite consensus disorder prediction 1 22 - -
Sebi448g00033 364 Gene3D Phosphorylase Kinase; domain 1 42 133 - -
Sebi448g00033 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi448g00033 Sebi-Chr448 551758 555778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi448g00033 42 364 MAP Kinase Kinase Kinase AT5G01850 68.715 8.92e-169 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi448g00033 PK_Tyr_Ser-Thr 7.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi448g00033 - - gmx:100816708 571.237