Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi448g00024 ATGCAGTGGAGTGGAGATTGTGGAATTGAAGTTGAAAATGGAGTCAAGAAGTTGCATGAACGTGGCGTGTGCCACCTCAACGTCGATTCGGTGGCGCAAAGGTTGGGCCCTGCGATCCGGTCTCTGCTTGAACTTCTAGATACTGGTGGCGTCAGCTGTATAAACTGTGCAAGTAATTCAGGACTTCAACCTGCTGCAAGTAATGAAAAGCCTAATGGATCTGGGACATCAAAGATTAAAAATGTCAGTGCACAGCAGTGTGTCTCTCTGGCAAACCAATTAAATGTGAGGGGTATGCAAGCAGGGCAATATGTGGAGAATGATGGGCTGAGGTGCTGGCTCAAACCTCATCATGTTGATACAGAGGGGCATTCTAAGGAAATGAAACCGGAAGTTTTGCCTTCTGTTGGAGAATTAGGAAGCACTTTGATATCACAATTTCATCGTGAATCTAATGGATCATCTAAGACTGCCAAAGCAGAGAACTGTAAGGCAGACACAGACATGCAAGATATATATGAATCGCTGGCACAGACAAATTTGAGTATGGCCCTTGCTTCCCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTAATGAAAGGGAACAAAGTAAGACATCACCTCCACTTTTATTGGGGTCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTTGCCCCAGGCTTAGAAGCAAATGCTGGCATGGTATCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGAGGAAGGAATCAGTTGCTTCCACGTTATTGGCCTAGAATTACAGATCAAGAGTTGCAACAAATATCAGGAGACTCAAACTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCTAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGAATGGACCCTGAGGGAAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTGCAGTACAGGAAACACTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCACTGTCCAAAAAATGGAACTCAGCTGGTGGTGACATGAGTTGGCATAATATTGACATGCCTGAAAGCAGGAAAAGAGATGGGTTGCCTTTGCCACCTGTTCTGGCTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAAGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTGCTTCGTCCACCTCCAACAGTTAAGCCAAGCGTTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAAAGGAGTATATTTGTGGTACGATCAACTGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTCAAAATGGCGAAAGTTGCCAGTTGATGTACTTATTCCCCCTAAGTGGACATGCGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTTCTGCTCCCAATGAATTGAACCCGAGGGAACTAGATAATCTACTGAGACTGAACAAGGAATTCAAGAAACAAAGACTAGCAGCATGCCACAGACCAGCCTTGGAACAAGAAAGTTCTGGACTGGATGCTTTGGCAAATGCTGCAATACTTGGAGATGATGCAAGTGGCTCTGGCAGGACACCTGTCGTTACCACTACAAAACACCCCCGGCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGAAGGCCAAGGATGAATCAGAAGTAGACAGCAACTCTCGACATTTAACTCTAGTTGATGGTTCTGACAATGAAGCAAGGGTGCCAAATGAGTTGGATTCAAGGAATCAAGACCATGTGACTGAAGCCGCTAAGGGGCAATTAGATTTGAATTGCCAACCTGATCGAGAAGACATGCAAGCTGGGCCAAACACTCTGAGTATGATGAGTCTTCTTGAAGAAGCAAATCTCCCACTGGAGACTTACCTAAAGCAAAACGGTCTTACCAGCTTGATATCAGAGCAGCAAACAAATTCAGCCTCAAATGTGCAGGCACAGACAACCAACGAAAGCGAGGGAAGACATAATGAGAATTGCTATACTACTTCTGCGGTTCAGGAGCAGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGACAGAGACCAAAACAATTCACTCTCATGA 2619 0.4448 MQWSGDCGIEVENGVKKLHERGVCHLNVDSVAQRLGPAIRSLLELLDTGGVSCINCASNSGLQPAASNEKPNGSGTSKIKNVSAQQCVSLANQLNVRGMQAGQYVENDGLRCWLKPHHVDTEGHSKEMKPEVLPSVGELGSTLISQFHRESNGSSKTAKAENCKADTDMQDIYESLAQTNLSMALASPLGNSNPFHSAVVNEREQSKTSPPLLLGSRSRHLLPKPPRPTLAPGLEANAGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSAAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMSWHNIDMPESRKRDGLPLPPVLAPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSVVMIEDHVFEEYEEPPVFGKRSIFVVRSTGINEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCSAPNELNPRELDNLLRLNKEFKKQRLAACHRPALEQESSGLDALANAAILGDDASGSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWKAKDESEVDSNSRHLTLVDGSDNEARVPNELDSRNQDHVTEAAKGQLDLNCQPDREDMQAGPNTLSMMSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRHNENCYTTSAVQEQESSPEENSGQDRDQNNSLS 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi448g00024 872 Gene3D - 555 611 - -
Sebi448g00024 872 SMART B3_2 287 387 IPR003340 GO:0003677
Sebi448g00024 872 ProSiteProfiles B3 DNA-binding domain profile. 287 388 IPR003340 GO:0003677
Sebi448g00024 872 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 41 824 - -
Sebi448g00024 872 Pfam B3 DNA binding domain 287 386 IPR003340 GO:0003677
Sebi448g00024 872 ProSiteProfiles Zinc finger CW-type profile. 552 602 IPR011124 GO:0008270
Sebi448g00024 872 MobiDBLite consensus disorder prediction 819 872 - -
Sebi448g00024 872 Pfam CW-type Zinc Finger 557 599 IPR011124 GO:0008270
Sebi448g00024 872 MobiDBLite consensus disorder prediction 725 762 - -
Sebi448g00024 872 MobiDBLite consensus disorder prediction 200 226 - -
Sebi448g00024 872 Gene3D - 265 392 IPR015300 -
Sebi448g00024 872 CDD B3_DNA 285 386 IPR003340 GO:0003677
Sebi448g00024 872 SUPERFAMILY DNA-binding pseudobarrel domain 284 386 IPR015300 -
Sebi448g00024 872 FunFam B3 domain-containing transcription repressor VAL1 265 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi448g00024 Sebi-Chr448 403951 411538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi448g00024 38 841 B3 DNA Binding Superfamily AT4G32010 48.529 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi448g00024 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi448g00024 K09287 - gmx:100778833 1519.98