Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi448g00022 ATGACGCAAGTGCAATTCATCCTATCCTTGTTTCTTGTTCTTTTTGGTCCACTCCTAGTGATCTCAGTAGACCAAGCTTTCAACGATGATGTCCTGGGGTTGATTGTGTTCAAGGCTGGTCTTGAAGACCCAAAAGGTAAACTCTCTACATGGAATGAAGATGATTCTAGTCCCTGCAATTGGAATGGTGTCAAATGTGACCCTGCAACCAATAGGGTATCTGCTCTTGTCCTTGATGGATTCTCTCTTTCTGGCCACATTGGTAGAGGGCTTCTGAGATTGCAATTCCTTCAAATTTTGTCCCTTTCTAGGAATAACTTCACAGGGACCATAAACCCTGATCTTCTTAGCTTTTGGAATTTACAAGTTGTTGATTTGAGTGAGAACAACCTCTCTGGGTCAATCCCATATGGACTTTTCCAGCAATGTTGGTCTCTAAGAGTGGTATCATTTGCAAAAAACAACCTCTCAGGTAAGATTCCTGATTCTTTGAGCTCCTGCTCCTCATTAGCAACTCTGAACTTTTCCTCTAATCAGCTACATGGGGAACTACCATCTGGGATGTGGTTTTTGAGGGAACTACAGTCACTTGATCTGTCAAATAACTTGCTGGAAGGAGAGATTCCTGATGGAATTCAGAATCTTTATGATTTGAGGGAGTTGAGGCTAGGGAAGAACCGCTTCATTGGTAGGCTTCCTGTGGATATTGGAGGCTGCTTGCTTTTGAAGTTGATTGATATCAGTGACAATTTTCTCTCTGGAAAACTTCCTGAGTCAATACAAAGACTCACCTCATGCACATACCTCAGTTTGCAAGGAAATTCATTCACAGGATACGTTCCAAGTTGGATTGGAGAATTGAAAAATCTTGAGATATTAGATCTTTCTGCAAATACATTTTCTGGTTGGATTCCAAAATCAATAGGAAATCTTGACTCGTTGAGTAGATTAAATCTGTCCAGGAATCAGCTCACAGGAAACCTGCCAGAGTCAATGGTAAACTGCATTAAGCTTTTGACGCTTGACATCAGTCACAATCACTTGGCAGGACTTCTTTCTTCATGGATATTTAGGATGGGCTTACAAAGCATCTCACTTTCTGGGAACAGCTTCAGTAAGAACAATTATCCTTCCCTTACTTCTATACCTGTATCTTATCATGGCCTTCAGGTTTTGGACTTGTCATCAAATGCATTTTCTGGGGTACTTCCATCTGGCATTGGAGGTCTTAGTAGTTTGCAAGTCTTAAATTTGTCCACCAACAATATCTCTGGTTCTATTCCAGTCAGTATAAGAGAACTTAAATCATTATACATTCTTGATTTAAGTGACAACAAGCTTAATGGAAACATCCCTTTTGAAATAGAAGGGGCAATTTCACTCAGTGAACTGAGGCTACAAAAGAACTTCATAGGTGGGAGAATTCCATCCCAAATTGAGAAATGTTCAGCTCTCACATATTTGAATCTTGCTCACAACAAGCTTATTGGTTCAATCCCTGCACCCATTGCAAACCTAACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAGCCTACCCAAGGAGCTGGCAAATCTTACCCAGCTTTTCTCATTTAATGTTTCCCATAACCACCTTCAAGCTCACAATCTTCTTAACAAAGACAGTGAAATTGGTCGTGGTGGATTTGGAGTTGTTTATTGCACTGTCCTTCGAAATGGGCGTTCTGTTGCAATCAAGAAGCTTACAGTGTCCAGTTTGACAAAGTCCCAAGAAGACTTTGAAACAGAGGTTCAAAAGCTTGGGAAGATCAGGCATCAGAATCTTGTGGCACTTGAAGGTTATTACTGGACTTCAACCTTACAGCTCCTTATTTATGAGTACCTAGCTAGAGGGAGTTTGCACAAGCTTCTACATGATGATAATAGCAAAATTGTTTTTTCTTGGCGACAAAGGTTCAAGATTATTCTAGGAATGGCAAAAGGGTTGGCCTATTTGCACCAAATGAACAGAATCCATTATAATCTAAAATCAACAAATGTTTTGATTGATTGTTCTGGTGAGCCAAAAATAGGAGATTTTGGGTTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTTTTGAGTAGCAAAGTTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCTTGCCGCACAGTTAAGATAACTGAGAAATGTGATATATATGGTTTTGGAATCCTGGTTTTGGAGGTGGTGACAGGAAAAAGACCAGTGGAATATATGGAGGATGATGTGGTTGTTCTATGTGACATGGTGAGGGGTGCATTGGAGGATGGCAAGGTGGAGCAATGTGTTGATGGGAAGCTTCTAGGTAATTTTGCTGCAGAGGAAGCAATTCCTGTGATGAAATTGGGGTTAGTTTGTGCATCACAAGTACCATCAAACCGTCCAGATATGGCTGAGGTAGTCAACATATTAGAGTTGATCCAATGCCCTTCAGAAGGACAAGAGGAATTACAATGA 2499 0.407 MTQVQFILSLFLVLFGPLLVISVDQAFNDDVLGLIVFKAGLEDPKGKLSTWNEDDSSPCNWNGVKCDPATNRVSALVLDGFSLSGHIGRGLLRLQFLQILSLSRNNFTGTINPDLLSFWNLQVVDLSENNLSGSIPYGLFQQCWSLRVVSFAKNNLSGKIPDSLSSCSSLATLNFSSNQLHGELPSGMWFLRELQSLDLSNNLLEGEIPDGIQNLYDLRELRLGKNRFIGRLPVDIGGCLLLKLIDISDNFLSGKLPESIQRLTSCTYLSLQGNSFTGYVPSWIGELKNLEILDLSANTFSGWIPKSIGNLDSLSRLNLSRNQLTGNLPESMVNCIKLLTLDISHNHLAGLLSSWIFRMGLQSISLSGNSFSKNNYPSLTSIPVSYHGLQVLDLSSNAFSGVLPSGIGGLSSLQVLNLSTNNISGSIPVSIRELKSLYILDLSDNKLNGNIPFEIEGAISLSELRLQKNFIGGRIPSQIEKCSALTYLNLAHNKLIGSIPAPIANLTNLQYVDLSWNELSGSLPKELANLTQLFSFNVSHNHLQAHNLLNKDSEIGRGGFGVVYCTVLRNGRSVAIKKLTVSSLTKSQEDFETEVQKLGKIRHQNLVALEGYYWTSTLQLLIYEYLARGSLHKLLHDDNSKIVFSWRQRFKIILGMAKGLAYLHQMNRIHYNLKSTNVLIDCSGEPKIGDFGLVRLLPMLDHCVLSSKVQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEDGKVEQCVDGKLLGNFAAEEAIPVMKLGLVCASQVPSNRPDMAEVVNILELIQCPSEGQEELQ 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi448g00022 832 PRINTS Leucine-rich repeat signature 338 351 - -
Sebi448g00022 832 PRINTS Leucine-rich repeat signature 434 447 - -
Sebi448g00022 832 SUPERFAMILY L domain-like 45 375 - -
Sebi448g00022 832 SMART LRR_typ_2 311 335 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 410 434 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 506 530 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 215 239 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 94 118 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 287 310 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 120 142 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 386 409 IPR003591 -
Sebi448g00022 832 SMART LRR_typ_2 191 214 IPR003591 -
Sebi448g00022 832 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 307 550 - -
Sebi448g00022 832 CDD STKc_IRAK 555 821 - -
Sebi448g00022 832 Gene3D Ribonuclease Inhibitor 306 553 IPR032675 -
Sebi448g00022 832 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Sebi448g00022 832 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Sebi448g00022 832 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Sebi448g00022 832 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Sebi448g00022 832 SMART LRR_sd22_2 506 532 - -
Sebi448g00022 832 SMART LRR_sd22_2 434 449 - -
Sebi448g00022 832 SMART LRR_sd22_2 191 214 - -
Sebi448g00022 832 SMART LRR_sd22_2 287 313 - -
Sebi448g00022 832 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Sebi448g00022 832 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 28 306 - -
Sebi448g00022 832 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 544 821 - -
Sebi448g00022 832 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 626 827 - -
Sebi448g00022 832 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515
Sebi448g00022 832 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Sebi448g00022 832 Gene3D Transferase(Phosphotransferase) domain 1 627 830 - -
Sebi448g00022 832 ProSitePatterns Protein kinases ATP-binding region signature. 555 578 IPR017441 GO:0005524
Sebi448g00022 832 SUPERFAMILY L domain-like 361 545 - -
Sebi448g00022 832 Gene3D Phosphorylase Kinase; domain 1 555 626 - -
Sebi448g00022 832 Gene3D Ribonuclease Inhibitor 27 305 IPR032675 -
Sebi448g00022 832 SUPERFAMILY Protein kinase-like (PK-like) 542 822 IPR011009 -
Sebi448g00022 832 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 543 625 - -
Sebi448g00022 832 Pfam Protein kinase domain 550 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi448g00022 832 ProSiteProfiles Protein kinase domain profile. 549 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi448g00022 Sebi-Chr448 364698 367794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi448g00022 83 829 Receptor kinase-like Gene Family AT5G01890 43.797 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Sebi448g00022 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi448g00022 - - gmx:100791204 882.478