Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi448g00017 ATGAGCCAGTTGGAGCATGGGATTGAAGAACTAGGATGGGAAAACGGACAACTTTCCATGCATGAACATGGCTTAAAACCGCCGCCGAAGCCTATCAACACCGGAAACCCTACTACTACATGGGAAAAGCATGACGCATTCAACTTCATAATCAACCAAGGCATCGGTGCCTATGAGAACGGTATGGTCCCTTGGCATGACTCTCGCCGTGCTCCTGCGCCGGCCAAAACGGTGCCTACGGACGCTTTAGTGCCGTGCTCTAATTACCGTACGGAAGACCAGCGGAGCATGCAGCAGGCAGTTACGGAGTCCGGAAGGGTTGGCACGTGCGTGGCGTCTTGTGGTGGGGCTTCAATTCAGGAGGACGATGGCGGCGTCATCGCGGGGAAACGTGCCGGCGTGGTGGCGCGTGCGCCTACCGAGAACGAGTTGAGTGGCTGCTGGGATCGGAGTGTCAGTGCCAGTGCCACTTGCCACAGGGATTTGAGTAGTGAGACACTGGATGAGGATTACAAGACAAAAAGAATGGAGAGATCTTCATTGTCCACTAAAAGGAACAGAGCTGCAGCTGTGCACAACCAATCTGAAAGGAAAAGGAGAGATAAGATCAACCAAAGAATGAAGGCATTGCAAAAGTTGGTCCCAAATTCCAGTAAGAGTGATAAAGCATCAATGCTGGATGAGGTAATAGAATATCTGAAGCAATTGCAAACGCAAGTACAAATGATGAATTGGATGAAAATGTCGACCATGATGCTGCCAATAACCATGCAACAACAACTTCAAATGTCTATGATGGCTCAAATGGGGATGGGAATGGGCATGGACATGAATATTCCAAACATCCCTCCTGTCTTCCCCTTCATGCCTATGGCCTCGTCATGGGATGCCTGCGGTGGGGATCGACTGCAAGGAGCACCACCAACGCCTGTAAGCATGGATGCATACAACAGGATGGCTGCAGCCCTGTATTCGCAGCTGCAGCATCCTCCAGGTTCTAATTCCAAGAGCTTAACGAGCGAGCTTCTACATGCTAGCTCCACCTTTCTGACTGGATAA 1059 0.5061 MSQLEHGIEELGWENGQLSMHEHGLKPPPKPINTGNPTTTWEKHDAFNFIINQGIGAYENGMVPWHDSRRAPAPAKTVPTDALVPCSNYRTEDQRSMQQAVTESGRVGTCVASCGGASIQEDDGGVIAGKRAGVVARAPTENELSGCWDRSVSASATCHRDLSSETLDEDYKTKRMERSSLSTKRNRAAAVHNQSERKRRDKINQRMKALQKLVPNSSKSDKASMLDEVIEYLKQLQTQVQMMNWMKMSTMMLPITMQQQLQMSMMAQMGMGMGMDMNIPNIPPVFPFMPMASSWDACGGDRLQGAPPTPVSMDAYNRMAAALYSQLQHPPGSNSKSLTSELLHASSTFLTG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi448g00017 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Sebi448g00017 352 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 332 IPR031066 -
Sebi448g00017 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 249 IPR036638 GO:0046983
Sebi448g00017 352 Gene3D - 182 248 IPR036638 GO:0046983
Sebi448g00017 352 MobiDBLite consensus disorder prediction 19 38 - -
Sebi448g00017 352 FunFam transcription factor UNE10 isoform X1 182 247 - -
Sebi448g00017 352 Pfam Helix-loop-helix DNA-binding domain 191 237 IPR011598 GO:0046983
Sebi448g00017 352 SMART finulus 193 242 IPR011598 GO:0046983
Sebi448g00017 352 CDD bHLH_AtPIF_like 187 248 IPR047265 -
Sebi448g00017 352 Coils Coil 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi448g00017 Sebi-Chr448 313877 317689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi448g00017 4 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 36.134 4.26e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi448g00017 HLH 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi448g00017 - - ahf:112697399 243.432