Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi448g00014 ATGGATGTTGTTCTTCATTACATGTTTTCTCTTATATTACTTCTTTCTCTACTCTTAAACCCTTGTTATTGCCTCCTCCATCGAAAATTGTTTAATGTTTCCAAAATTGAAAACGAGGATCAATGGCAAACAGCAGCAGCTACATGGTATGGAGCTCCAGATGGTGGTGGAACAGATGGGGGTGCTTGTGGATACGTTGACAGTGTGGACAAACCTCCACTCTCTAAAATGGTATCAGCTGGTGGTCATTCTCTTTTCCTTGATGGCGAAGGATGTGGTGCCTGTTATGAGGTGAAATGCACAGAAAATGGTGCATGTTCAGGAAAAGCGGTGACAGTGATGATATCTGATGAATGTCCTGGCTGTGCCTTAAAATCAGTCCAATTCGATATGAGTGGCACTGCCTTTGGTTCCATGGCAAGTCCAGGCAAGGCAGATGAACTTCGCAAAGCTGGACAGCTTAATAATATTCAGGTTGCATGTTCGTTTGGGAATTCTATAGCGTTCAGAATTGACGGTGGGGCGAACCCATACTATTTTGCGACGGAAATAGAATACGAAAATGGGGATGGGGATCTTGTAGACATTGAGTTGAAGCAAGGTCATAAATCAGACACGTGGCTTCCAATGAAGCGTTCGTGGGGTGCAAGATGGGCTTTGCAATCATCAAGTGGTTCAGAGCTGCAACCTCCATTCTCAATAAAGCTCATAGAGGCTTGCAAGGGTACCAACAAGACCCTTGTGGCCGATAATGTCATTCCTCTCAACTGGCAACCTGATCAAGTTTATCGATCTGTCGTCAATTTCTAG 810 0.442 MDVVLHYMFSLILLLSLLLNPCYCLLHRKLFNVSKIENEDQWQTAAATWYGAPDGGGTDGGACGYVDSVDKPPLSKMVSAGGHSLFLDGEGCGACYEVKCTENGACSGKAVTVMISDECPGCALKSVQFDMSGTAFGSMASPGKADELRKAGQLNNIQVACSFGNSIAFRIDGGANPYYFATEIEYENGDGDLVDIELKQGHKSDTWLPMKRSWGARWALQSSSGSELQPPFSIKLIEACKGTNKTLVADNVIPLNWQPDQVYRSVVNF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi448g00014 269 Pfam Lytic transglycolase 79 143 IPR009009 -
Sebi448g00014 269 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Sebi448g00014 269 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Sebi448g00014 269 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Sebi448g00014 269 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Sebi448g00014 269 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Sebi448g00014 269 PRINTS Major pollen allergen Lol pI signature 241 258 IPR005795 GO:0005576|GO:0019953
Sebi448g00014 269 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Sebi448g00014 269 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Sebi448g00014 269 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Sebi448g00014 269 SUPERFAMILY PHL pollen allergen 166 265 IPR036749 -
Sebi448g00014 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 155 IPR007112 -
Sebi448g00014 269 PANTHER EXPANSIN-B3 17 269 - -
Sebi448g00014 269 Pfam Expansin C-terminal domain 167 254 IPR007117 -
Sebi448g00014 269 Gene3D - 30 161 IPR036908 -
Sebi448g00014 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 265 IPR007117 -
Sebi448g00014 269 Gene3D - 162 269 IPR036749 -
Sebi448g00014 269 SUPERFAMILY Barwin-like endoglucanases 40 155 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi448g00014 Sebi-Chr448 235552 236978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi448g00014 20 269 Expansin Gene Family AT1G65680 51.575 4.71e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi448g00014 - - gmx:100786475 359.762