Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi447g00056 ATGGGTGAATTGAAAGACACCGAGGCTTACGAGGAAGAGCTCCTCGACTACGAAGAAGAAGATGAAAAGGCTCCTGACTCTGCTAAAGCCACTGCTGAAACCGCCAAGAAGGGTTATGTTGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTGTGGATTTGAGCATCCTTCAGAAGTTCAACACGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTTATTTGCCAAGCAAAATCGGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACCCTTCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGTCACGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAATATCAAGGTTCACAAAGAATTACTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGAATTCTTGCTCTGACTAGAGATAAGGACCTTGGTTTAAAGAATGTGAGGCATTTTATACTGGATGAGTGTGACAAAATGCTTGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGACAAACAAGTGATGATGTTTTCAGCAACACTCAGCAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAGATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTGGTGCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAATCGTAAGTTGAACGATCTCCTTGATGCTCTGGACTTCAACCAAGTTGTTATTTTTGTTAAAAGTGTTAGCAGAGCAGCGGAATTGAACAAGTTGCTCGTGGAGTGTAATTTCCCATCGATATGCATACATTCTGGAATGTCTCAGGAAGAAAGATTGAAACGATACAAAGGCTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGAATTGATATAGAACGTGTTAATATAGTCGTCAATTATGACATGCCTGATTCTGCTGATACTTATCTGCACAGGGTGGGAAGAGCTGGTAGATTTGGTACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTGCCGCTGATTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCTACATATAGTAAGACGATTTCCCTCTTTGCTTACTCGTTTAAGATGATTTCCTTGAGATGCCAAACTGATGAAGTTTGGGGACAATTAGGAGGCGGAATTCCAAAGATCTATTGCTGA 1380 0.4145 MGELKDTEAYEEELLDYEEEDEKAPDSAKATAETAKKGYVGIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSEVLNQVQSRFEVDIKELPEQIDTSTYSKTISLFAYSFKMISLRCQTDEVWGQLGGGIPKIYC 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi447g00056 459 CDD SF2_C_DEAD 262 391 - -
Sebi447g00056 459 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Sebi447g00056 459 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 400 - -
Sebi447g00056 459 FunFam DEAD-box ATP-dependent RNA helicase 56-like 33 251 - -
Sebi447g00056 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 396 IPR027417 -
Sebi447g00056 459 Gene3D - 41 257 IPR027417 -
Sebi447g00056 459 CDD DEADc_DDX39 44 251 - -
Sebi447g00056 459 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Sebi447g00056 459 SMART helicmild6 301 382 IPR001650 -
Sebi447g00056 459 FunFam DEAD-box ATP-dependent RNA helicase 258 426 - -
Sebi447g00056 459 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Sebi447g00056 459 SMART ultradead3 64 265 IPR014001 -
Sebi447g00056 459 Gene3D - 258 426 IPR027417 -
Sebi447g00056 459 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 422 IPR001650 -
Sebi447g00056 459 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Sebi447g00056 459 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi447g00056 Sebi-Chr447 805886 816807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi447g00056 1 423 Eukaryotic Initiation Factors Gene Family AT5G11200 83.226 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi447g00056 K12812 - gmx:100799082 807.364