Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi447g00048 ATGCTTTCTCCATCTTCATTACAAGGATATCAACAATTTCTAGCAGAGGCAAGTGGTCATTACTTGCAAAAATGTTTTCTGTCCAAGTTCAAAGAAAACTGTGGTTATAATGACATAAAAGTGGCCTTTAAATTGCAGGTTAAACTTCTGCTGAGAGTTCATCACAAAAATCTAACTTCTCTTATTGGGAGGGCAAAGTTCTTCACTTGGGAAGACAGGCTTCGAATAACACTGGATGCAGCGCAAGGACTGGAATATCTGCATAATGGTTGCAAGCCACCAATAATCCACAGAGATGTAAAAACTACAAATATTTTATTAAATGAAAACTTTCAAGCAAAACTGGTTGATTTTGGGCTATCCAAAACCTTTACCACTGATGGAGGCACACATTTGTCCACTGTTGTTGCTGGAACTCCTGGTTACCTTGATCCTGAGTATGGCATATCAAGCAGGTTGACAGAGAAGAGTGATGTTTACAGCTTTGGAGTTGTTCTTTTGGAGATAATAACAAGTCAACCAGCTATATCAACAACACATGAGAAGATTCACATAAGTGAGTGGGTTAGTTCCATGGTTTCTAATGGAGATATTAAAAATATTGTTGACTCAAGATTACATGAAGACTTTGAGACTAGCTCTGTCTGGAAAGCTGTTGAAATTGGAATGGCTTCAGTGTCGACCAATCCTGCCAGAAGACCAAACATGAATGATGTTGTGAACGAGTTAAAAGAGTGTTTGGCTATAGAATTAGCTCGAAAAATGACTGGTCGTGACATTGAAAATGATCCAATAGAGTTGGTCACCTTGAATGTGACTACCGAACTCGGTCCTGGAGCTAGGTAG 846 0.3901 MLSPSSLQGYQQFLAEASGHYLQKCFLSKFKENCGYNDIKVAFKLQVKLLLRVHHKNLTSLIGRAKFFTWEDRLRITLDAAQGLEYLHNGCKPPIIHRDVKTTNILLNENFQAKLVDFGLSKTFTTDGGTHLSTVVAGTPGYLDPEYGISSRLTEKSDVYSFGVVLLEIITSQPAISTTHEKIHISEWVSSMVSNGDIKNIVDSRLHEDFETSSVWKAVEIGMASVSTNPARRPNMNDVVNELKECLAIELARKMTGRDIENDPIELVTLNVTTELGPGAR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi447g00048 281 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 51 256 - -
Sebi447g00048 281 SMART serkin_6 24 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi447g00048 281 Pfam Protein kinase domain 53 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi447g00048 281 Gene3D Transferase(Phosphotransferase) domain 1 53 262 - -
Sebi447g00048 281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 95 107 IPR008271 GO:0004672|GO:0006468
Sebi447g00048 281 SUPERFAMILY Protein kinase-like (PK-like) 43 243 IPR011009 -
Sebi447g00048 281 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi447g00048 281 PANTHER OS07G0107800 PROTEIN-RELATED 1 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi447g00048 Sebi-Chr447 545872 547139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi447g00048 43 281 Receptor kinase-like Gene Family AT1G51820 53.933 4.30e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi447g00048 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi447g00048 - - gmx:100794504 374.015