Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi447g00013 ATGGCTGCAGGTTCGTTGGGAGGGTTGCAAGAACACCTCAAGTTGGCCAGAGAGTACGCTCTCGAAGGACTCTATGATACCTCTATTATCTTCTTCGATGGCGCTCTTGCCCAGATCAACAAGCACCTAAACACTGTTGATGACCCTTTAATTCGTGCAAAATGGATGAATGTTAAGAAAGCCCTTTCTGAGGAAACAGAAGTTGTAAAGCAACTAGATGCAGAGAGAAGGGCTTTTAAAGATAACCCTGTTGGAAGGCGCCCTTCTTCGCCTCCAATATCTACTAAATCGTCATTTGTTTTTCAGCCATTAGATGAGTATCCTACTTCATCAAGTGGTCCCATTGATGATCCTGATGTATGGAGGCCACCTAGCAGAGACACTTCAAGCAGAAGACCCACAAGGCCTGGTCAAATGGGTACTCGGAAATCTCCACAAGATGGGGCATGGGCTCGAGGATCTACAAGAACAGGTACAACTGGGCGTGGTGCAAAAGCTGGTGCTACAAGTAGAGTTAACTCAGGGGCCCGAGCATCAACTACAGGAAAGAAAGGCAGTGTTTCTGGAAAGTCTAGCAAGACAGATACACCTGTAACTAATGGTGAAGCTGCTGAAGACGGTAAGTCAAAGAAGGGACAGTACGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGATGTGTTAGAAACATCTCCTGGAGTGAGATGGGATGATGTTGCGGGGCTTACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGCTTATACTACATGTTGGATTTTACATTGAAAAAACTGCTATGGCTTATTCTTTTAAGGAATTAGGAGGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGAAAGACTCTTCTTGCTAAAGCTGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGAGCATCTGGAGAGCATGAATCATCCAGAAGGGTGAAATCTGAACTCCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCGGGAAAAACGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAGGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGTGGCCCCTGATGTCAATATAGATGAGGTGGCTCACCGAACAGAGGGCTATAGTGGAGATGATTTGACAAATGTTTGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTCGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGATATTGAACGCCATGAGAAGTGGTTTACTGAATTTGGATCAGCATAA 1629 0.4426 MAAGSLGGLQEHLKLAREYALEGLYDTSIIFFDGALAQINKHLNTVDDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKDNPVGRRPSSPPISTKSSFVFQPLDEYPTSSSGPIDDPDVWRPPSRDTSSRRPTRPGQMGTRKSPQDGAWARGSTRTGTTGRGAKAGATSRVNSGARASTTGKKGSVSGKSSKTDTPVTNGEAAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQLILHVGFYIEKTAMAYSFKELGGPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRREKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVAHRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi447g00013 542 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 542 IPR028596 GO:0008017|GO:0008568|GO:0051013
Sebi447g00013 542 PANTHER AAA DOMAIN-CONTAINING 25 541 - -
Sebi447g00013 542 MobiDBLite consensus disorder prediction 79 217 - -
Sebi447g00013 542 Pfam Vps4 C terminal oligomerisation domain 495 540 IPR015415 -
Sebi447g00013 542 SMART AAA_5 290 433 IPR003593 GO:0016887
Sebi447g00013 542 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Sebi447g00013 542 FunFam Katanin p60 ATPase-containing subunit A1 432 518 - -
Sebi447g00013 542 Gene3D - 432 518 - -
Sebi447g00013 542 Gene3D - 3 80 - -
Sebi447g00013 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 538 IPR027417 -
Sebi447g00013 542 Pfam AAA+ lid domain 453 494 IPR041569 -
Sebi447g00013 542 MobiDBLite consensus disorder prediction 148 199 - -
Sebi447g00013 542 Pfam ATPase family associated with various cellular activities (AAA) 294 431 IPR003959 GO:0005524|GO:0016887
Sebi447g00013 542 CDD Kp60-NTD 9 75 - -
Sebi447g00013 542 FunFam Katanin p60 ATPase-containing subunit A1 273 443 - -
Sebi447g00013 542 Gene3D - 233 533 IPR027417 -
Sebi447g00013 542 MobiDBLite consensus disorder prediction 88 109 - -
Sebi447g00013 542 ProSitePatterns AAA-protein family signature. 403 422 IPR003960 GO:0005524|GO:0016887
Sebi447g00013 542 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi447g00013 Sebi-Chr447 143401 147248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi447g00013 227 534 Calmodulin-binding Proteins AT3G56690 38.170 4.66e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi447g00013 K07767 - gmx:100820625 897.886