Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi446g00061 ATGGTAAATTTCACCATTACTGGTGGAGAGATAGTTCCTGAGATAGAAATGGAGTCTTGGGAAACCATTTTTGATCTGAAATCCAAAATTGAAGACAAATTGGATGTGAGTATGCATAGGCAAAGCCTCTGGTACAATGACAGAGAGTTGATTGATGATGATCGAACAGTTAGAGGCTATGACTTTCTTCGAGATGCAACACTTATGCTCATTGTCGAACCATTGCCACCACACCTGAAACTTCACGTTTTGGTGAAGCATTTTGGCGGTAATGGGTACGTGAGGGTGAAGGAGACAGATAAGGTAAGTGACCTGCACAATAAAGTTTCCATATACTGGGGCATTCTTCCTAACAGTTTCAGCCTTCATCGTCACAATGTCAAATTGGAGGATAATCATCCTCTTCGTGCTTATTACATTAACGAGGCGTCTGAGATCAAACTTTCTGTTATGATAGAACCTCGTTGA 468 0.4103 MVNFTITGGEIVPEIEMESWETIFDLKSKIEDKLDVSMHRQSLWYNDRELIDDDRTVRGYDFLRDATLMLIVEPLPPHLKLHVLVKHFGGNGYVRVKETDKVSDLHNKVSIYWGILPNSFSLHRHNVKLEDNHPLRAYYINEASEIKLSVMIEPR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi446g00061 155 SUPERFAMILY Ubiquitin-like 2 77 IPR029071 -
Sebi446g00061 155 Gene3D - 2 73 - -
Sebi446g00061 155 SMART ubq_7 81 153 IPR000626 GO:0005515
Sebi446g00061 155 SMART ubq_7 2 73 IPR000626 GO:0005515
Sebi446g00061 155 Gene3D - 82 149 - -
Sebi446g00061 155 PANTHER UV EXCISION REPAIR PROTEIN RAD23 14 74 - -
Sebi446g00061 155 ProSiteProfiles Ubiquitin domain profile. 1 73 IPR000626 GO:0005515
Sebi446g00061 155 SUPERFAMILY Ubiquitin-like 81 149 IPR029071 -
Sebi446g00061 155 ProSiteProfiles Ubiquitin domain profile. 81 150 IPR000626 GO:0005515
Sebi446g00061 155 Pfam Ubiquitin family 14 73 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi446g00061 Sebi-Chr446 799282 799749 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi446g00061 5 72 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.294 2.87e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi446g00061 K08770 - vvo:131658932 155.992