Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi446g00029 ATGTCACAAGATTCTGAGGAGATAAAGACCATTGAGCAGTGGAGATGGTCTGAAATGCAAGGCCTTGAGCTAGTGTCTTCTGCTCCTTCTATTTCCAACCCACCAACACCAATATTGGAGGAGGAAAGAGGAGACTCCAAGGAAGAGGAAGAGCCTTCTACACAAGAGGGAGAGACAAGGGAAATGGAGGAGGCCTCAGTACCCAAGAAAAGTGATGGTCTTTCTAATGGGAACACAAAAGGAAGTAGTAGCAGTACTAATGGGGAGAAGCCTGAGAGTGTTCCCTCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGTTTGGATTACATTCTCATGGCAATTGGAACTGTTGGAGCATTTGTACATGGTTGTTCCTTGCCACTGTTTCTTCGGTTCTTCGCTGATCTTGTAAATTCTTTTGGTTCCAATGCCAATAATTTGGATAAGATGACCCAGGAAGTGGTGAAGTATGCATTTTATTTCCTGGTGGTGGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCATGCTGGATGTGGACCGGAGAGCGCCAATCAACGAGGATGAGGATAAGGTATCTTGAAGCTGCCTTGGACCAGGACATTCAATTCTTTGACACAGAGGTTCGAACATCCGATGTTGTTTTTGCCATTAACACTGATGCTGTGATGGTACAAGATGCCATAAGTGAAAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGATTTGCTGTGGGTTTCACTGCTGTTTGGCAATTAGCACTGGTTACCCTCGCTGTAGTCCCTATGATAGCAGTAATCGGAGCCATCCACACCACCACATTAGCCAAGCTATCTAGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAATATTGCAGAACAGACTATTGTTCAAATTCGAGTGGTGTTGGCATTTGTTGGGGAGAGCAGAGCACTACAGGCCTATTCCTCTGCTTTAAGGATTGCTCAGAAGATTGGCTACAGGAGTGGTTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTTTGCTATGGTATGGAGGCTATCTAGTTAGGCACCACTACACCAATGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATTGGTGGATTGGCTTTAGGCCAGTCTGCACCTAGCATGACTGCGTTTACAAAGGCCAGAGTTGCAGCTGCAAAAATCTTCCGTGTGATTGATCACAAGCCGAGTATAGACAAAGAGAGTGAATCAGGTGTAGAGTTAGACACTGTTACAGGACTAGTGGAACTGAAAAATGTGGACTTTTCATACCCATCAAGGCCAGAGGTTCGGATCCTTTGCAATTTCAACTTGAATGTGCCTGCTGGAAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCCGGCAAGAGCACAGTTGTCTCTCTTATTGAGAGATTCTATGATCCTTCTTCAGGACAAGTTTTGCTTGATGGGCATGATGTTAAGACATTGAAGCTTAAGTGGTTGAGACAGCAAATAGGACTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACAATTAGAGAAAACATACTATTGGGTAGGCCTGATGCTGACCAGGTTGAAATTGAAGAAGCTGCAAGAGTAGCTAATGCTCATTCTTTCATCATCAAACTTCCTGATGGCTATGATACTCAGGTAGGAGAGAGAGGGCTGCAACTTTCAGGTGGACAAAAGCAGAGAATAGCAATTGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCTGAGTCAGAAAAGTTGGTTCAAGAAGCCCTTGATCGATTCATGATTGGTAGAACAACTCTTGTTATTGCACATCGCCTCTCCACTATCCGCAAAGCTGACCTTGTAGCTGTACTTCAACAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTGCTAAAGGTGAAAATGGAATCTATGCCAAGCTTATCCGGATGCAGGAAATGGCTCATGAAACTGCTATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCTAGAAACTCTGTAAGCTCACCCATAATTGCTCGGAATTCTTCTTATGGCCGGTCACCATACTCAAGGAGGCTTTCTGACTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGTATCACATCCAAATTACAGGCATGAAAAACTTGCCTTCAAAGAGCAAGCTAGTTCCTTCTGGAGGCTTGCAAAGATGAACTCTCCTGAATGGCTTTATGCTTTGATGGGTTCTATAGGTTCTGTTGTTTGTGGATCTCTCAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTCTATTACAATCCAAACCACAGACACATGATTAGAGAAATTGAAAAATACTGCTACTTGTTGATTGGGCTTTCATCAGCTGCACTTCTCTTCAATACATTGCAGCACTCCTTTTGGGATATTGTTGGTGAAAATCTCACAAAACGGGTTAGGGAGAAAATGTTAACTGCAGTGCTTAAAAATGAAATGGCATGGTTTGATCAAGAGGAAAATGAGAGTGCCCGGATTGCAGCCAGGCTAGCTCTTGATGCTAACAATGTCAGATCAGCCATTGGAGATAGGATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCATGTACTGCAGGGTTTGTATTGCAGTGGCGCCTTGCCCTTGTCCTTGTAGCTGTCTTCCCTGTTGTGGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGATCTGGAAGCTGCTCATGCCAAGGCCACACAATTAGCTGGGGAAGCTATAGCCAATGTAAGGACTGTTGCTGCTTTCAATTCAGAAAAGAAAATTGTTGGCCTTTTCTCCTCCAACCTTGAAATTCCACTGCGGCGCTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAACATGGTATATCTGATTTCTCTAAGACAATAAGAGTTTTTATGGTCCTCATGGTTTCTGCTAATGGTGCTGCTGAAACCTTAACCTTGGCTCCTGACTTCATCAAAGGAGGTAGAGCCATGAGGTCAGTTTTTGAACTCCTTGACCGTAGAACTGAAATTGAACCAGATGATCCAGATGCTACACCTGTCCCTGATCGTCTTCGTGGTGAAGTAGAACTTAAACATGTTGATTTCTCTTATCCCACTAGGCCAGATATGCCAGTTTTTCGTGACCTTAGTCTTCGTGCAAGAGCAGGCAAAACTCTTGCTCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTCATACAAAGGTTCTATGATCCAACATCTGGCCGAGTCATGATTGATGGAAAGGACATAAGGAAATACAATCTCAAGTCCCTTAGAAGGCACATTGCTGTGGTACCTCAAGAGCCATGCTTGTTTGCTGCTACAATTTATGAAAATATTGCTTATGGGCATGACTCAGCTACTGAAGCTGAGATTGTTGAGGCTGCAACTCTTGCAAATGCTCACAAGTTCATATCTTCTCTGCCGGATGGATATAAGACATTTGTTGGTGAGAGAGGAGTTCAACTATCTGGAGGACAGAAGCAGAGAATAGCAATTGCTCGTGCTTTTGTGAGAAAAGCAGAACTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGATCTGTTCAAGAGGCCCTAGACCGTGCTTGTAAAGAAAAAACTACTATTATTGTTGCACACAGGCTATCAACTATCAGGAATGCCAACCTCATTGCAGTGATTGATGATGGCAAAGTAGCAGAACAAGGCTCCCATTCACAGTTATTGAAAAATCACCCTGATGGGATCTATGCTCGCATGATTCAACTTCAAAGGTTCACAAATAGCCAAGTCATTGGGATGGCCTCAGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAAGGAAGGCTAA 4080 0.438 MSQDSEEIKTIEQWRWSEMQGLELVSSAPSISNPPTPILEEERGDSKEEEEPSTQEGETREMEEASVPKKSDGLSNGNTKGSSSSTNGEKPESVPSVGFGELFRFADGLDYILMAIGTVGAFVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFAVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIAEQTIVQIRVVLAFVGESRALQAYSSALRIAQKIGYRSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMIGGLALGQSAPSMTAFTKARVAAAKIFRVIDHKPSIDKESESGVELDTVTGLVELKNVDFSYPSRPEVRILCNFNLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDVKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGIYAKLIRMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDVSHPNYRHEKLAFKEQASSFWRLAKMNSPEWLYALMGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALLFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFSSNLEIPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFAATIYENIAYGHDSATEAEIVEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDRACKEKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTNSQVIGMASGSSSSTRPKDDEKEG 1359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi446g00029 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 770 1057 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi446g00029 1359 Gene3D ABC transporter type 1, transmembrane domain 726 933 IPR036640 GO:0005524|GO:0016020
Sebi446g00029 1359 Gene3D ABC transporter type 1, transmembrane domain 992 1090 IPR036640 GO:0005524|GO:0016020
Sebi446g00029 1359 PANTHER ABC TRANSPORTER B FAMILY 80 820 IPR039421 -
Sebi446g00029 1359 ProSitePatterns ABC transporters family signature. 577 591 IPR017871 GO:0005524|GO:0016887
Sebi446g00029 1359 MobiDBLite consensus disorder prediction 71 92 - -
Sebi446g00029 1359 Gene3D ABC transporter type 1, transmembrane domain 101 691 IPR036640 GO:0005524|GO:0016020
Sebi446g00029 1359 CDD ABC_MTABC3_MDL1_MDL2 1093 1332 - -
Sebi446g00029 1359 Pfam ABC transporter 458 605 IPR003439 GO:0005524
Sebi446g00029 1359 CDD ABC_MTABC3_MDL1_MDL2 438 677 - -
Sebi446g00029 1359 SUPERFAMILY ABC transporter transmembrane region 102 422 IPR036640 GO:0005524|GO:0016020
Sebi446g00029 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1093 1329 IPR003439 GO:0005524
Sebi446g00029 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1084 1332 IPR027417 -
Sebi446g00029 1359 Pfam ABC transporter 1112 1260 IPR003439 GO:0005524
Sebi446g00029 1359 SMART AAA_5 1120 1312 IPR003593 GO:0016887
Sebi446g00029 1359 SMART AAA_5 465 651 IPR003593 GO:0016887
Sebi446g00029 1359 MobiDBLite consensus disorder prediction 40 68 - -
Sebi446g00029 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 403 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi446g00029 1359 FunFam ABC transporter B family member 1 1083 1333 - -
Sebi446g00029 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 438 674 IPR003439 GO:0005524
Sebi446g00029 1359 ProSitePatterns ABC transporters family signature. 1232 1246 IPR017871 GO:0005524|GO:0016887
Sebi446g00029 1359 FunFam ABC transporter B family member 1 101 436 - -
Sebi446g00029 1359 MobiDBLite consensus disorder prediction 25 94 - -
Sebi446g00029 1359 SUPERFAMILY ABC transporter transmembrane region 757 1080 IPR036640 GO:0005524|GO:0016020
Sebi446g00029 1359 FunFam ABC transporter B family member 1 749 1058 - -
Sebi446g00029 1359 CDD ABC_6TM_Pgp_ABCB1_D2_like 759 1075 - -
Sebi446g00029 1359 CDD ABC_6TM_Pgp_ABCB1_D1_like 114 411 - -
Sebi446g00029 1359 FunFam ABC transporter B family member 19 1059 1081 - -
Sebi446g00029 1359 Gene3D - 428 678 IPR027417 -
Sebi446g00029 1359 FunFam ABC transporter B family member 1 428 678 - -
Sebi446g00029 1359 Pfam ABC transporter transmembrane region 772 1040 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi446g00029 1359 Pfam ABC transporter transmembrane region 115 387 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi446g00029 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 677 IPR027417 -
Sebi446g00029 1359 Gene3D - 1091 1338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi446g00029 Sebi-Chr446 474227 480100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi446g00029 90 1354 Calmodulin-binding Proteins AT2G36910 88.784 0.0 2317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi446g00029 K05658 - gmx:100777382 2349.7