Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi446g00012 ATGCTCCAAACAACCTGCATTTTACTCATCTCTGTTCTGGCTTCGTTTTTACCTCATGGCAGAGCAATGCTGAACCTCACTCTGCCAGGCCAACATCCAGACCCCGAAGCTATTGCCCGAGAAGTTCACAGGAAAGTTAATGCTTCACTTACAAGGAGGGAAATGCTAGCAGTATCAGAGAAAGATGTGCCATCGTGTCTAACTGGAAACCCCATTGATGACTGTTGGAAATGCGACCCAGATTGGGCTAACAACAGACAAAGGCTAGCTGATTGTGCAATTGGGTTCGGGCAAAACGCGAAGGGAGGCAAAGGTGGGCAATTTTACATAGTCACGGACTCCTCAGACGATGACGCTGTGAACCCAAAACCTGGGACACTTAGATATGCTGTGATACAGAATGAGCCACTATGGATTGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAACTCATTTTTAACAGCTATAAAACCATTGATGGGCGTGGCGCTGATGTGCACATTGTGGGTGGAGGCTGTATCACACTTCAGTATATAAGCAATGTCATCATACACAACATTCACATCCACCATTGTCATCCCTCCGGTAACGCTAACGTGCGGTCGAGTCCAGAGCACTACGGTTTCCGAACAGAATCAGACGGTGACGGAATCTCGATATTCGGATCAAGGGACATATGGATCGACCACTGCACACTATCACGTTGCAAGGACGGTTTGATAGACGCAGTGATGGGTTCAACGGCGATAACGATTTCCAACAACCACTTCTCACACCACAACGAGGTGATGCTTTTAGGGCACAGCGACCACTACACGCCAGACTCAGCTATGCAGGTGACAATCGCTTTCAACCACTTCGGCGAGAATCTCGTGCAGAGAATGCCGCGGTGCAGGCTAGGGTACATCCACGTGGTGAACAACGACTTCACGATGTGGGAGATGTACGCTATTGGGGGAAGTGGGGGGCCCACAATTAACAGCCAGGGGAACCGTTACACTGCACCAGAGGATCGTTATGCGAAGGAGGTGACGAAGAGGTTGGATACTGGAGAAGGAGAGTGGAGTTCGTGGAATTGGAGGTCGGAAGGGGATGTGATGGTGAATGGAGCTTTCTTTGTGGCTTCGGGTGGAGATAGTGAGGGAAAGTATGAGAAGGCTTACAGTGTTGACCCTAAATCTGCTGATCGGATTTCATTCCTCACCATGGCCGCCGGTGTTCTCGGTGTTGCAAGGGACAATAATCTGGGTATGTGGACTAGAGGACCCAATGATGGTGGTACTTATTTTTCAGATTTCGGCCCAGATTACACAGACGATATGTCCCAGACTACAATGCTGATGCCACCTTCACTTACTTTCACTCTTGTCTCTGTTTTTCTTGCATTCTTGTGCTTGTTATTTCATACAAGTACAACCTTAGCTATAATTCTATAA 1443 0.4809 MLQTTCILLISVLASFLPHGRAMLNLTLPGQHPDPEAIAREVHRKVNASLTRREMLAVSEKDVPSCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGFRTESDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYTPDSAMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTMWEMYAIGGSGGPTINSQGNRYTAPEDRYAKEVTKRLDTGEGEWSSWNWRSEGDVMVNGAFFVASGGDSEGKYEKAYSVDPKSADRISFLTMAAGVLGVARDNNLGMWTRGPNDGGTYFSDFGPDYTDDMSQTTMLMPPSLTFTLVSVFLAFLCLLFHTSTTLAIIL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi446g00012 480 Pfam Pectate lyase 153 321 IPR002022 -
Sebi446g00012 480 PANTHER PECTATE LYASE 18-RELATED 31 413 IPR045032 GO:0030570
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Sebi446g00012 480 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Sebi446g00012 480 Gene3D - 69 411 IPR012334 -
Sebi446g00012 480 FunFam Pectate lyase 69 411 - -
Sebi446g00012 480 SMART amb_all 144 341 IPR002022 -
Sebi446g00012 480 SUPERFAMILY Pectin lyase-like 70 398 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi446g00012 Sebi-Chr446 153216 157430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi446g00012 1 479 Polysaccharide Lyase AT3G53190 70.492 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi446g00012 K01728 - gmx:100815062 845.499