Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi446g00006 ATGCAGGTGTTAGAAGAACTTGTGGTTTCCAAGGATCACACGCAGATCATCAAAGGCAAGCGCACCAAGCGTCAAAGGCTACCTTCCATGCCTTCAAAGTCTGAAGAAGAAGAAGAAAGACTTGATCTTGCAACAACCTCACCCACCACAATTGAATTGAAGGGCAAAATTGAAGAAGAGGAAGAGTACATGGCCAATTGTCTCATTCTCTTGGCTCAAGGCCATCATGCGCCACCGGATCACAAGTCATCAGGCCTATGCCTTTATGAGTGCAAGACTTGCAACCGATGCTTCCCTTCATTCCAAGCGCTTGGTGGACATAGAGCGAGTCACAAGAAACCTAAGGCTAACGGTAATTGTACGGAAGAAAAGAAAGCAGTTACTGCTTTTGTGAATGATGATCATTATGGCCCCACCATAAATACTATTCTCTCGTTGCAACTAACAAACAGGGGTTCGTATACTGCTACTACTACTGCTGCAATAACAAAATCTAAAGTTCACGAGTGTTCTATTTGTGGTGCTGAATTCTCATCTGGACAAGCCTTGGGAGGCCATATGAGGAGGCACAGAACTCATGTGACCACGTCCACAACGACGTCGTCTATGAGCGGTGGAAGCCCTGAATCACAAGAAGCCAAGAAACCGAGAAACGTTTTGAAATTGGACTTGAATTTGCCAGCACCAGAGGATGATCACAAATTTTCGTTTCAGCCTGGGCCCAGAGAAAACGTTATTGTCTTCTCTACATCTTCTTTGGTGGATTGTCATTACTAA 777 0.4479 MQVLEELVVSKDHTQIIKGKRTKRQRLPSMPSKSEEEEERLDLATTSPTTIELKGKIEEEEEYMANCLILLAQGHHAPPDHKSSGLCLYECKTCNRCFPSFQALGGHRASHKKPKANGNCTEEKKAVTAFVNDDHYGPTINTILSLQLTNRGSYTATTTAAITKSKVHECSICGAEFSSGQALGGHMRRHRTHVTTSTTTSSMSGGSPESQEAKKPRNVLKLDLNLPAPEDDHKFSFQPGPRENVIVFSTSSLVDCHY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi446g00006 258 MobiDBLite consensus disorder prediction 184 216 - -
Sebi446g00006 258 MobiDBLite consensus disorder prediction 17 43 - -
Sebi446g00006 258 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Sebi446g00006 258 MobiDBLite consensus disorder prediction 28 43 - -
Sebi446g00006 258 MobiDBLite consensus disorder prediction 194 211 - -
Sebi446g00006 258 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Sebi446g00006 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Sebi446g00006 258 SMART c2h2final6 168 190 IPR013087 -
Sebi446g00006 258 SMART c2h2final6 89 111 IPR013087 -
Sebi446g00006 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Sebi446g00006 258 SUPERFAMILY beta-beta-alpha zinc fingers 89 190 IPR036236 -
Sebi446g00006 258 Gene3D Classic Zinc Finger 87 193 - -
Sebi446g00006 258 Pfam C2H2-type zinc finger 89 114 - -
Sebi446g00006 258 Pfam C2H2-type zinc finger 167 191 - -
Sebi446g00006 258 PANTHER ZINC FINGER PROTEIN ZAT5 46 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi446g00006 Sebi-Chr446 82277 83053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi446g00006 3 258 C2H2 Transcription Factor Family AT5G03510 41.254 7.06e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi446g00006 zf-C2H2_6 9.7e-13 CL0361