Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi445g00013 ATGGACATGCATTATAGTGAAAGTGACGAGTCTGAAGATGAAGGCAAGGTCCCCGAGGGAGATTCATCTGATATAAATGTTGAGGGTGACTTTGATGCCAATGTCAATTCTACCATACCCCCTCACCAGATTCAACTCCAATCCCTTGTGGTCATCAACATCAAGAAAGTGGATCCATTTTGGAATGTAAATCCACATTATAGGTTTATAACACAGAAGGAAAGGAAGGGTCTAGAAGGTCTTGTTTGGGAAGAGCTAGAAGGAAGGATAGTGGTGGAGCTTTACGATGATGTGGTGCCCAAAACTGCTCAGAATTTCAGAGCTCTCTGCACTGGTGAGAAAGGCATTGGTCCAAATACTGGGGTGCCCCTTCATTTCAAGGGATCGTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGTGATATTTCTGCTGGAGATGGTACTGGAGGAGAATCCATTTATGGACTTAAGTTTGAAGATGAAAATTTTGAGTTGAAGCATGAAAGGAAAGGCATGTTATCAATGGCAAACTCTGGTCCCAATACAAATGGGTCTCAGTTTTTTATCACCACTACCCGAACTTCTCATCTAGATGGCAAGCATGTTGTATTTGGGAAAGTAGTTAAAGGAATGGGAGTGGTCCGTTCGATAGAGCATGTTACCACCGGAGAACAGGATCGTCCCACTCTTGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATGATGGGATATCTAACTTTTTCAAAGATGGTGATACTTACCCTGATTGGCCAGCAGACCTTGATGAGAGCCCTAATGAACTTGACTGGTGGATGAAATCTGTTGACTCAATCAAAACTTTTGGCAATGAGTATTACAAAAAACAAGACTACAAAATGGCTCTAAGGAAGTATAGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAAGAAGGGATTGATGAAGAGAAAAGTTTAGGTTTGAGAAAAACGAAGTCTCAGATATTTACAAACAGCTCTGCTTGTAAATTGAAATTAGGGGATCTTAAAGGAGCATTGTTGGATACAGAATTTGCAATGCGTGATGGAGAGAATAATGCCAAAGCTTTGTTCCGCCAAGGACAGGCTTACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTAACCTTAGAGCCAAATGATGCTGGAATAAAAAAGGAACTTGCTGCTGCCAGGAAGAAGCTGATAGGCGTGATCAAGAGAAAAAAGCATATAGCAAGATGTTCCAATAACAGTGGTTTATGTAAAGCAGAGGAAAACAACCAGATCACAACAGCATATACAAAAGGTAAAAGGTTCAGGCTTGAACCAATTGTTACTAAAGTATTAGGAATGAGGCTCAGATGA 1407 0.4101 MDMHYSESDESEDEGKVPEGDSSDINVEGDFDANVNSTIPPHQIQLQSLVVINIKKVDPFWNVNPHYRFITQKERKGLEGLVWEELEGRIVVELYDDVVPKTAQNFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGEQDRPTLDVKIVDCGEIPEGEDDGISNFFKDGDTYPDWPADLDESPNELDWWMKSVDSIKTFGNEYYKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSLGLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGENNAKALFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKLIGVIKRKKHIARCSNNSGLCKAEENNQITTAYTKGKRFRLEPIVTKVLGMRLR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi445g00013 468 SMART tpr_5 282 315 IPR019734 GO:0005515
Sebi445g00013 468 SMART tpr_5 368 401 IPR019734 GO:0005515
Sebi445g00013 468 SUPERFAMILY Cyclophilin-like 81 245 IPR029000 -
Sebi445g00013 468 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 87 243 - -
Sebi445g00013 468 Pfam Tetratricopeptide repeat 368 401 IPR001440 GO:0005515
Sebi445g00013 468 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 87 241 IPR002130 GO:0000413|GO:0003755
Sebi445g00013 468 Gene3D Tetratricopeptide repeat domain 277 428 IPR011990 GO:0005515
Sebi445g00013 468 ProSiteProfiles TPR repeat region circular profile. 368 401 - -
Sebi445g00013 468 ProSiteProfiles TPR repeat profile. 368 401 IPR019734 GO:0005515
Sebi445g00013 468 SUPERFAMILY TPR-like 278 414 IPR011990 GO:0005515
Sebi445g00013 468 FunFam peptidyl-prolyl cis-trans isomerase D 280 429 - -
Sebi445g00013 468 CDD cyclophilin_ABH_like 88 241 - -
Sebi445g00013 468 FunFam Peptidyl-prolyl cis-trans isomerase D 70 248 - -
Sebi445g00013 468 MobiDBLite consensus disorder prediction 1 28 - -
Sebi445g00013 468 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 126 143 IPR020892 GO:0003755|GO:0006457
Sebi445g00013 468 Gene3D - 78 249 IPR029000 -
Sebi445g00013 468 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 202 217 IPR002130 GO:0000413|GO:0003755
Sebi445g00013 468 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 143 IPR002130 GO:0000413|GO:0003755
Sebi445g00013 468 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 174 189 IPR002130 GO:0000413|GO:0003755
Sebi445g00013 468 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Sebi445g00013 468 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 201 IPR002130 GO:0000413|GO:0003755
Sebi445g00013 468 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 242 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi445g00013 Sebi-Chr445 497773 503330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi445g00013 83 240 U-box Gene Family AT5G67530 44.025 1.64e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi445g00013 K05864 - gmx:100804110 632.098