Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi445g00006 ATGGCCATGCAGTATCCAGCAACAGCTATGGCTATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCTTATGTTCACCACCATTACCAGCCTCACACGCCTGTTGTATCGGCCAAGGTCATACGAAATAAGCAAACCGGTCAGTCGGAGGGATATGGATTTGTGGAGTTCTATTCACGAGCAACGGCTGAGAAAGTCTTGCAGAACTATAATGGTACTATGATGCCAAATACAGATCAGGCATTTCGTCTGAATTGGGCTACATTCAGTGCAGGTGATAGGCGGACTGATGCTACTTCTGATCTCTCTATATTTGTGGGAGACCTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACCTTTGCTAGCAGATTTTCATCTATTAAGGGAGCCAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAAGGCTACGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGAGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCTATGCGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCACAAGCTGTGGTGTTGGCTGGTGGACACTCTAATGGTGCTGTGGCCCAAGGTTCCCAGCCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACAACCATTTTTAAAATTTGGTGATGTTGTCTCAGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGACAGAAAGAATGCTGAAGAGGCAATTCAGGCATTGAATGGAACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGACTGATTCCAATGGAAGCCATTACGGTGGTCAGGGTTATGGAGGCCATGGATATGCTGCGAGACACAATCAGGATATAGGTATGCATCCTGCTGCTGCTGCTGTTCAAGGGGCTTCGTAA 1026 0.4483 MAMQYPATAMAMMQQQMMMYPQHYMPYVHHHYQPHTPVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRTDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSNGAVAQGSQPEGDSNNTTIFVGGLDSDISDEDLRQPFLKFGDVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGSHYGGQGYGGHGYAARHNQDIGMHPAAAAVQGAS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi445g00006 341 Gene3D - 93 198 IPR012677 -
Sebi445g00006 341 SUPERFAMILY RNA-binding domain, RBD 29 93 IPR035979 GO:0003676
Sebi445g00006 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
Sebi445g00006 341 SUPERFAMILY RNA-binding domain, RBD 213 320 IPR035979 GO:0003676
Sebi445g00006 341 CDD RRM2_SECp43_like 104 183 - -
Sebi445g00006 341 SMART rrm1_1 19 88 IPR000504 GO:0003723
Sebi445g00006 341 SMART rrm1_1 224 291 IPR000504 GO:0003723
Sebi445g00006 341 SMART rrm1_1 106 180 IPR000504 GO:0003723
Sebi445g00006 341 FunFam Polyadenylate-binding protein RBP47B 93 195 - -
Sebi445g00006 341 Gene3D - 25 91 IPR012677 -
Sebi445g00006 341 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 299 - -
Sebi445g00006 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 295 IPR000504 GO:0003723
Sebi445g00006 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 81 IPR000504 GO:0003723
Sebi445g00006 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 176 IPR000504 GO:0003723
Sebi445g00006 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 288 IPR000504 GO:0003723
Sebi445g00006 341 SUPERFAMILY RNA-binding domain, RBD 89 201 IPR035979 GO:0003676
Sebi445g00006 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 92 IPR000504 GO:0003723
Sebi445g00006 341 Gene3D - 205 329 IPR012677 -
Sebi445g00006 341 FunFam Polyadenylate-binding protein RBP47 205 321 - -
Sebi445g00006 341 CDD RRM1_SECp43_like 38 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi445g00006 Sebi-Chr445 242749 247796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi445g00006 28 294 Eukaryotic Initiation Factors Gene Family AT2G23350 27.574 4.43e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi445g00006 - - lja:Lj4g3v0575400.2 549.666