Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi444g00056 ATGAAAGGGGAAGTGCAGCTTCAACCTCCATCGGTTCTGCAAAACCCTAGTGATTCCGACCCTTTACTCGACAATCAGGAGGCAGATGAGTCCCCTGGATCAAGCTCTAGTGAGATTAAGGATGAGGATGACGTTGAGGCTGGCTCACTCCCTTGTTGTCGAATTTGCCTAGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAGTTTGTCCACCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACTTGCAAAGCACAATTTCATCTTAGAGTTGAAATGTTTGAGGATAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTAATTGCTGCTATTGGTGGCTTTGCGTACATCATGGACAAAGATGGGACCTTCAGGAACTCATTTGATGATGGTTGGGATAGGATACTTTCAAAGCATCCTATACCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCATTGCTCTTCCCTCAATTCCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATTTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCAGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACGAAGGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAATTAGACCCAGAACATGAAAGCCGCTTGAAAATGCTTAAGCTTTTGTGA 927 0.4412 MKGEVQLQPPSVLQNPSDSDPLLDNQEADESPGSSSSEIKDEDDVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVEMFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYFPPKLDPEHESRLKMLKLL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi444g00056 308 SUPERFAMILY RING/U-box 50 108 - -
Sebi444g00056 308 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 308 - -
Sebi444g00056 308 SMART ringv_2 52 104 IPR011016 GO:0008270
Sebi444g00056 308 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
Sebi444g00056 308 MobiDBLite consensus disorder prediction 1 45 - -
Sebi444g00056 308 MobiDBLite consensus disorder prediction 8 33 - -
Sebi444g00056 308 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Sebi444g00056 308 CDD RING_CH-C4HC3_MARCH 53 104 - -
Sebi444g00056 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 118 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi444g00056 Sebi-Chr444 825871 829412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi444g00056 1 308 C3H Transcription Factor Family AT1G11020 79.751 8.72e-172 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi444g00056 - - gmx:100818950 597.816