Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi444g00046 ATGAAGGATCCAGTGGAGGATCAAGTGAAATCATCTAGGAGGGCTCTGCAGAAGTCCTCGGAGCTTAGAAGAAAGGGTAGTAGTAGTAGAAGAAGAAGCCAGTGTAAACAAGAGAAATTACAAGAAACAGGACTTGATTCACAACTGGGTTCATCTGCTTCTTGTAAAAGTCTTGTCTTTCCTGCAAGGCCTGGCTATGGCCAGCTTGGGACAAAGTGTTTGGTCAAAGCTAATCACTTCCTAGCAGATATATCAGCATCAGACTTGAGCCATTACACTGTTTTGATAACTCCTGAAGTTACTTCTCGTAAAACAAGCAAAGCTATCATAGCAGAGTTAGTGAGGCTTCACAGGAACACTGAGTTGGGGATGAGGCTTCCTGTATATGATGGTGGAAGAAATCTCTACACTGCTGGGTTGCTTCCTTTTGCATACAAAGAGTTCACCATACTATTGAGTGAGGATCATGAGGGTACTGGTGGTACCAGGGAAAGAGAATTTGAAGTGGTTATTAAGTTTGCAACTCGTGTTAGTATGCATCAATTACGTGAGCTTCTCAGTGGGAAACAAGTGGACACCCCACAAGAGGCTCTTACTGTCATTGACATTGTGTTGAGGGAGCTTGCGGCTCAGAGCTACGTATCAATTGGGAGGTTTCTCTATTCTCCAGATTTAAGGAAACCACAGCAGCTGAGTGGTGGCCTGGAATCATGGCGTGGTTTCTACCAGAGTATAAGGCCTACTCAAATGGGATTGTCCCTTAATATTGACATGTCATCGATGGCTTTTATAGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGTACTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTAAAAGTTGAAGTCACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATATCAGGATTGACATCACAGCCCACAAGGGAGCTCAATTTCCCCCTGGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATACTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGAGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTTTGCTGAAGGTATCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTACAGACAATTCAACAAAATGATTATGAGTATAATCCCTATGCAAAGGAATTTGGAATCAGCATAGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCAGCACCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAACATGATGAACAAGAAAGTTATAAATGGAAGCACGGTGAGATATTGGGCATGTATCAATTTCTCTAGAAGTGTCCAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGACCCTGTGATTCCTGTATATTCATCAAGACCAGATATGGTCAAGAAGGCCTTGAAGTATGTACATTCTGCTTCTCTAGACAAACTTGGTGGAAAAGAGCTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGCGATCTCAAAAGAATCTGTGAAACAGATCTGGGGTTGATTTCCCAGTGCTGTCTTACAAAACACGTATTCAAGATTAATAGACAGTATTTGGCAAATGTGGCACTAAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTCTAAGTTGGAGGATCCCATTGGTTAGTGACATCCCAACAATAATTTTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGATTGGTATGTGCTCAGCCTCATCGTGAAGAACTCATTCAAGATCTTTTCAAATGTTGGAAGGATCCTCATCATGGCATAGTTTATGGTGGCATGATCAGAGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTCTTGCTATATGAGCTTGATGCTATCCGTAAGGCTTGTGCATCTTTGGAAACTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTTTCAAACAATCATGATGACAAAAACAGCACTGATAAGAGTGGGAATATCTTGCCTGGTACCGTGGTGGATTCAAAGATCTGTCATCCAACTGAATTTGACTTCTACTTGTGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTATGGGACGAAAACAATTTCACTGCTGATGAGATTCAGTCTCTAACCAACAACTTATGCTACACCTATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCATCTGGCAGCTTACAGAGCTAGATTCTACATGGAACCTGATGTCCGTGAAATTGCTAAATCCCGAGGTGGAAGATCAAAAAATGAGTCAGTTCGGCCACTACCAGCTCTCAAAGAGAAGGTGAAGAATGTAATGTTTTACTGCTGA 2739 0.4221 MKDPVEDQVKSSRRALQKSSELRRKGSSSRRRSQCKQEKLQETGLDSQLGSSASCKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYTVLITPEVTSRKTSKAIIAELVRLHRNTELGMRLPVYDGGRNLYTAGLLPFAYKEFTILLSEDHEGTGGTREREFEVVIKFATRVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRFLYSPDLRKPQQLSGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVYSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDEKMNMKSVVDYFQEMYGYTIIYTHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNDYEYNPYAKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPVYSSRPDMVKKALKYVHSASLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLETSYQPPVTFVVVQKRHHTRLFSNNHDDKNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVREIAKSRGGRSKNESVRPLPALKEKVKNVMFYC 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi444g00046 912 ProSiteProfiles Piwi domain profile. 555 876 IPR003165 GO:0003676
Sebi444g00046 912 Gene3D paz domain 261 385 - -
Sebi444g00046 912 Pfam Piwi domain 556 875 IPR003165 GO:0003676
Sebi444g00046 912 MobiDBLite consensus disorder prediction 1 49 - -
Sebi444g00046 912 FunFam Protein argonaute-2 260 386 - -
Sebi444g00046 912 FunFam protein argonaute 10-like 624 912 - -
Sebi444g00046 912 ProSiteProfiles PAZ domain profile. 267 381 IPR003100 GO:0005515
Sebi444g00046 912 MobiDBLite consensus disorder prediction 1 39 - -
Sebi444g00046 912 Pfam Argonaute linker 1 domain 215 264 IPR014811 -
Sebi444g00046 912 Gene3D - 624 912 IPR036397 GO:0003676
Sebi444g00046 912 SMART Piwi_a_2 555 876 IPR003165 GO:0003676
Sebi444g00046 912 Pfam Mid domain of argonaute 464 541 IPR032473 -
Sebi444g00046 912 Gene3D - 445 618 - -
Sebi444g00046 912 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 877 - -
Sebi444g00046 912 Pfam N-terminal domain of argonaute 72 205 IPR032474 -
Sebi444g00046 912 SUPERFAMILY PAZ domain 262 421 IPR036085 GO:0005515
Sebi444g00046 912 SMART PAZ_2_a_3 271 403 IPR003100 GO:0005515
Sebi444g00046 912 CDD PAZ_argonaute_like 266 380 - -
Sebi444g00046 912 SUPERFAMILY Ribonuclease H-like 545 877 IPR012337 -
Sebi444g00046 912 CDD Piwi_ago-like 425 875 IPR045246 -
Sebi444g00046 912 Pfam PAZ domain 292 397 IPR003100 GO:0005515
Sebi444g00046 912 SMART DUF1785_2 214 266 IPR014811 -
Sebi444g00046 912 FunFam Argonaute 10 445 618 - -
Sebi444g00046 912 Pfam Argonaute linker 2 domain 409 453 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi444g00046 Sebi-Chr444 699284 704604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi444g00046 60 912 Eukaryotic Initiation Factors Gene Family AT5G43810 74.564 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi444g00046 K11593 - gmx:100808457 1691.01