Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi444g00042 ATGTCTCAAGTCAAGTGGGAAGCCGATAAAATGCTAGATGTTTATATCTACAATCATTTGATGAAGAGACAATTACATGTTTCTGCAAGAGCATTTCAGGCTGAAGCAAATGTTCCAACGAATGCTGATATTATAGATGCACCTCAAGGTTTTCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATATTCATTGCCAAGACCGGTCAGAATCAGTCAGAAGCAGCAACATTTTACCATCAGTACCAACTAAGTAAGGCGCAAATGGAAAAGCAACAAGATCCAATGCAGGAGCAGTTCTTATTGCAAGGGCATGCTCAACAGCAGCAATGTAGGGGTGGAACTCAACTTGTTAGTGGCAGTGCTAGACGTCCTCCTATTAACAAAGAACCTTTGATGAGGCAGACCAGGGCAACTATCAATGCTGTGGCAACAAAAAAGTATGAGGACAGGTTGAAGCTTCCACTCCAGAGAGATGCTTTAGATGATGTGGCCATTATGCAAAATGAAGCTGATAATGTTGGTCAGCTTCTGGACCCGAATTATGCCGCATTGTTGAAAGCAATAGGAGCAGCAACAACTAGTGGACAAGCTCTAGGACAAACACTGCTCAGTGCTCCTATCATTTTACCGGAGTATCTTCAACAAGTCCAAAATCAGAACCAGCAACTTCCAGGGTCTACACAAGACATAAAGAGTGATATGAATGTAATGATGAGGTCCCAAGCTGTTGTTCCAGAAGGATCCTTTATCGGCGTTCATGGTTCAAATCAAGGCAGTAGCAATTTGACTCTGAATGGATGGCCTTTAGCAGCACAGGATCAGCTTCCCTCAGGACTTCTCCAGCAGAATAATTTGATGCGGTCTTCACCATCTCCCAATCAACTTTCCCAACAGCTGCAACTTATGCTTCAGGAACAACAGAATTTTGCTGCATTTGCCAGTGATTTAGCAGGCAGAAGACTCAGAGAGCTTCTTGATAATCAAAATATGGATCTTGGGAAAGATGGCCAATCAAATTCTATTGGTGATTTAATTCCTAATGCTAATACGGGAATGCCTGCACCTACTCAAGTTGGTTCCCCTGTATTGCCTCATCAAGACTCAGATATGCTCCTTAAGCAACAAGTTCAAAAGAATAGTCAGCAGGTTCAACAGTATTCACAGCGTCCTCTTGCAAGCCAGCAGTCGCAAAGTCTCCAGCAACAAGGAAAAACTAGTTCTGGAACTATGTCCATTGCCTTACAAGGAAATGACCAGGCTTCCAAAAGTCAAATCAAGAAAACGCGAAAGCGAAAGCCAGCATCATCTTCAGGTTCTGCAACTGCAAACACCACAAGACCATCCACCAGTTCACCTTCAACACCATCTACACAAACACCAGGAGTCGTGATGACTGAGCCAACTGTGCAACAGAAGGCTGATATGGACGACCTCGTGGGTGATTCATCTTTGGGTGACAATGTTGAGTCATCCTCATCTCCTGATGATGCAAGCCATAGAGGAACAGTTGGCAAAGGCGGATACCCATTTAAGGAGATCAAGCACATAAAGGCAAGTTCACATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTGTTTGTTACTGGTGGCCATGATAAAAAGGCTTCTTTGTGGTGCACAGAATCATTTAACCTGAAATCTTCACTTGAAGAGCACACTCAATGGATAACTGATGTTCGATTTTGTCCAAGTATGCCGCGTCTTGCCACATCTTCAGCTGACAAGACTGTTAGGGTTTGGGATGCTGATAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGCAACAACTGCGTTGTCACTAGATTTTCACCCTAGTAATGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAGAATGGTAGTTGTGCTGGGGTTTTCAAGGGTGGTGTAAGTCAGATAAGATTTCAACCATGTCTTGGAAAGCTTCTTGCAGCCGCAGCAGATAATCTCATATCCATTCTTGACGTAGAAACCCTGGGTTGTAGCCTTAAATTGGAGGGCCATAATAACCTTGTCCGTTCTGTGTGCTGGGATTCTTCTGGAAAATATCTGGCATCTGTTAGTGATGATCTGGTTAGAGTCTGGACAGTTGGATCTGGTGGAGAAGGGCAATGCATTCGTGAGTTTAATGAATTTGGGATGAAATTCAACACCTGTGTTTTCCACCCCTTCTCTCCTATGCTGGTCATTGGCTGCCATAAGACTCTTGAGCTGTGGGACTTCATTGAAAACAAGACAGTGACTCTGAGTGCACATAACAAGCTTGTATCTTCCTTGGCAGTATCAAATATTACTGGGTTGGTGGCTTCAGCTAGTCATGACAAGTCTTTCAAGATCTGGAAGTGA 2397 0.4339 MSQVKWEADKMLDVYIYNHLMKRQLHVSARAFQAEANVPTNADIIDAPQGFLLEWWSVFWDIFIAKTGQNQSEAATFYHQYQLSKAQMEKQQDPMQEQFLLQGHAQQQQCRGGTQLVSGSARRPPINKEPLMRQTRATINAVATKKYEDRLKLPLQRDALDDVAIMQNEADNVGQLLDPNYAALLKAIGAATTSGQALGQTLLSAPIILPEYLQQVQNQNQQLPGSTQDIKSDMNVMMRSQAVVPEGSFIGVHGSNQGSSNLTLNGWPLAAQDQLPSGLLQQNNLMRSSPSPNQLSQQLQLMLQEQQNFAAFASDLAGRRLRELLDNQNMDLGKDGQSNSIGDLIPNANTGMPAPTQVGSPVLPHQDSDMLLKQQVQKNSQQVQQYSQRPLASQQSQSLQQQGKTSSGTMSIALQGNDQASKSQIKKTRKRKPASSSGSATANTTRPSTSSPSTPSTQTPGVVMTEPTVQQKADMDDLVGDSSLGDNVESSSSPDDASHRGTVGKGGYPFKEIKHIKASSHKVECCHFSSDGKLFVTGGHDKKASLWCTESFNLKSSLEEHTQWITDVRFCPSMPRLATSSADKTVRVWDADNPGYSLRTFTGHATTALSLDFHPSNDDLICSCDNSEIRYWSIKNGSCAGVFKGGVSQIRFQPCLGKLLAAAADNLISILDVETLGCSLKLEGHNNLVRSVCWDSSGKYLASVSDDLVRVWTVGSGGEGQCIREFNEFGMKFNTCVFHPFSPMLVIGCHKTLELWDFIENKTVTLSAHNKLVSSLAVSNITGLVASASHDKSFKIWK 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 714 IPR001680 GO:0005515
Sebi444g00042 798 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 798 IPR044716 GO:0003714
Sebi444g00042 798 SUPERFAMILY WD40 repeat-like 509 798 IPR036322 GO:0005515
Sebi444g00042 798 MobiDBLite consensus disorder prediction 477 507 - -
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 516 547 IPR001680 GO:0005515
Sebi444g00042 798 CDD WD40 512 798 - -
Sebi444g00042 798 MobiDBLite consensus disorder prediction 331 356 - -
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 642 IPR001680 GO:0005515
Sebi444g00042 798 ProSitePatterns Trp-Asp (WD) repeats signature. 577 591 IPR019775 -
Sebi444g00042 798 Gene3D - 645 798 IPR015943 GO:0005515
Sebi444g00042 798 SMART WD40_4 759 798 IPR001680 GO:0005515
Sebi444g00042 798 SMART WD40_4 675 713 IPR001680 GO:0005515
Sebi444g00042 798 SMART WD40_4 509 548 IPR001680 GO:0005515
Sebi444g00042 798 SMART WD40_4 594 633 IPR001680 GO:0005515
Sebi444g00042 798 SMART WD40_4 636 672 IPR001680 GO:0005515
Sebi444g00042 798 SMART WD40_4 551 590 IPR001680 GO:0005515
Sebi444g00042 798 SMART WD40_4 719 757 IPR001680 GO:0005515
Sebi444g00042 798 Pfam LisH 10 36 IPR006594 GO:0005515
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 798 IPR001680 GO:0005515
Sebi444g00042 798 MobiDBLite consensus disorder prediction 484 498 - -
Sebi444g00042 798 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Sebi444g00042 798 Pfam WD domain, G-beta repeat 555 590 IPR001680 GO:0005515
Sebi444g00042 798 Pfam WD domain, G-beta repeat 678 712 IPR001680 GO:0005515
Sebi444g00042 798 Pfam WD domain, G-beta repeat 762 798 IPR001680 GO:0005515
Sebi444g00042 798 Pfam WD domain, G-beta repeat 513 547 IPR001680 GO:0005515
Sebi444g00042 798 Pfam WD domain, G-beta repeat 597 633 IPR001680 GO:0005515
Sebi444g00042 798 MobiDBLite consensus disorder prediction 434 462 - -
Sebi444g00042 798 MobiDBLite consensus disorder prediction 370 422 - -
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 638 - -
Sebi444g00042 798 SMART Lish 8 40 IPR006594 GO:0005515
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 593 IPR001680 GO:0005515
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 766 798 - -
Sebi444g00042 798 MobiDBLite consensus disorder prediction 330 462 - -
Sebi444g00042 798 Gene3D - 364 644 IPR015943 GO:0005515
Sebi444g00042 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi444g00042 Sebi-Chr444 584988 593236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi444g00042 596 797 Miscellaneous Gene Families AT5G08390 24.402 2.46e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Sebi444g00042 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi444g00042 - - gmx:100801265 971.074