Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi444g00030 ATGGCAATGGTTTCAGCTGGTTTTCATCCCATAAGTAATGTGTGCGGCAGAAGAGAGAGTTGGAGACTGAAGGTGAAGGTTATCCGAGTGTGGAATATGGCTGCCATTGCCACGCCCCATGATCCTTATGCCTTGCAGATGCTTCTTCTTGATGAAGAGGGAACCTTGATCGAAGGAACTGTGCAGAAGGCAAACATGCAAAGGTTTTCAGCGATGATTGTGGAGGGTTTAGTTTACAAGATCACCAACTTCAACGTCATTAAGAATGGTGGGAGCTTTAGGGCTACTAGGCATGATCATAAGATCCTTTTTACTGTGAACACAAAAGTGATTTGCTGTGAAAACGTTTGCATCCCATCTTTGGGGTTGAGCCTTAAGAAGACTGATGAAATCCTCAAAACAAATGGTTTTTCTGAGTACCTGCTAGATTTCATGGGCATTCTGAGTGCTGTTTCTGAGGAGATCATTATGGTCAAGGGTGAGATGCAGAAGCGTCTCGTGTTACTTGATTTGGTGGATGAGATGGGTGAGGTCAAACTTGCTGTTTTTGGGGATATGGTGGATGTGGTTCTTGATTTAGTTTCTCAGCCAAGGATTGGTCTCCCAGTGTTGATCATCCAATTAGCTAAAGTGAATTTCTACAAGGGTCAAGTTGGGATCCAAAATGTTATGAATGCCACCAAGATTTGGTGGAATCCTGATATCCCCCTCGCAGTTGATTTTAAAAATAGCTTGGCAGTCCATGAGATTGAGACTGATGTGGAAGTGAGGGTCATAACACCTAGACCACGTCCTGTTTCTGCAAGTGATGAATTTCTGAAACTGTACCCAAAGAAAAGAGTTGGGGAGTTGTATGAACTAACGGAGGAAGGTTCTTTCATTATAATTGGCAATATTATGGAGGTTGTTCATGATGGTGACTGGTGGTATATGGCCTGCAGTTGTATGAGGGCTGTTAAGTATGGCCATGGAATGCCTTTCTGTGATGAATGCAAGACTATTGTCTATGATCTGACACCAAGGTATAAAATTAAGGTCATGGTATCTGATGGAAGCGATAGTGCACATTTGCTAATGTGGGACAATGAATGTTACTCATTGATAACTAGATCATGTCGTGATCTGTTGGCAATTTCTAAGGGTAAGCCTTCCAAGCAATATCCAAATGAGATTTTAGCCTTAGTTGGTAAAGAGGTGCTTTTTAAAGTTGAAGTTAAGCATGATGACAGTGACAATTTGGATGACTCATTCAAAGTGAAGAGTGTTTGTACTGACTGTATGATTATTAATGAATACAAGGAAGATGTGGATGATCAGACTCCCCTGAAGTTGAAGTTTGCACCTGCATTTTCAAAGATGGTTGATAATGACAAGACAAGTTGTGTTATTGAGATATCTCCTCTGTCAACTTCTGCAATAACTGAGGTTGATGTCACTCCAAAATCAGAGGCAATTTCATCATCCTCTGTGGACAAAAGCCTGGTCTTAACTAAGAGGGATGGTCAGCCCTCAGTTGATGCTGCACAAGGGAGAGGGAAGAGGGGCAAATTCAGGAATGTGAAGTTAGAGTAA 1572 0.4179 MAMVSAGFHPISNVCGRRESWRLKVKVIRVWNMAAIATPHDPYALQMLLLDEEGTLIEGTVQKANMQRFSAMIVEGLVYKITNFNVIKNGGSFRATRHDHKILFTVNTKVICCENVCIPSLGLSLKKTDEILKTNGFSEYLLDFMGILSAVSEEIIMVKGEMQKRLVLLDLVDEMGEVKLAVFGDMVDVVLDLVSQPRIGLPVLIIQLAKVNFYKGQVGIQNVMNATKIWWNPDIPLAVDFKNSLAVHEIETDVEVRVITPRPRPVSASDEFLKLYPKKRVGELYELTEEGSFIIIGNIMEVVHDGDWWYMACSCMRAVKYGHGMPFCDECKTIVYDLTPRYKIKVMVSDGSDSAHLLMWDNECYSLITRSCRDLLAISKGKPSKQYPNEILALVGKEVLFKVEVKHDDSDNLDDSFKVKSVCTDCMIINEYKEDVDDQTPLKLKFAPAFSKMVDNDKTSCVIEISPLSTSAITEVDVTPKSEAISSSSVDKSLVLTKRDGQPSVDAAQGRGKRGKFRNVKLE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi444g00030 523 Gene3D - 277 436 IPR012340 -
Sebi444g00030 523 CDD RPA1_DBD_C 293 422 IPR047192 -
Sebi444g00030 523 MobiDBLite consensus disorder prediction 495 523 - -
Sebi444g00030 523 SUPERFAMILY Nucleic acid-binding proteins 124 248 IPR012340 -
Sebi444g00030 523 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Sebi444g00030 523 Gene3D - 7 113 IPR012340 -
Sebi444g00030 523 PANTHER OS03G0429900 PROTEIN 7 424 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi444g00030 523 Pfam Replication factor-A C terminal domain 297 422 IPR013955 -
Sebi444g00030 523 SUPERFAMILY Nucleic acid-binding proteins 283 433 IPR012340 -
Sebi444g00030 523 Pfam Domain of unknown function DUF223 47 132 IPR003871 -
Sebi444g00030 523 CDD RPA1_DBD_A_like 22 110 - -
Sebi444g00030 523 Gene3D - 118 254 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi444g00030 Sebi-Chr444 392826 395431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi444g00030 1 375 Core DNA Replication Machinery Family AT5G08020 22.959 6.42e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi444g00030 - - lja:Lj6g3v0884310.1 342.813