Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi444g00012 ATGGCAGAACCAGAAGACAACCTTCAAGCCTCGACTATGGATGAAACCAAGAAGAAGAAGCAGAAGAAGAAGCGCGGCAAGAAAAGGTCTCGGGATATTGTTGAAGAAGAGCATGCAGAAGAAGAGGAGAATGGGAATAATACTGATAGAGATGGAGAATCCTTGAATAAGAAGAAGGAAGAGGAGGAGGTGGAAGGGGAAATTGAAGTGGAAGAGAAAAAGGTGAAGAACAATGCTGGCTCTGGAATTATGAGTAGTGAGTCTTTTGATTCTCTGGGATTGTCTGAACCTACTTATAAGGCCATTATGGACATGGGATTCCACCACATGACTCAGATTCAAGCGAGAGCAGTTCCACCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTGATTCCTGCTGTGGAGCTGCTGTACAATGTTAAATTTACACCTCGTAATGGAGCTGGTGTCATTGTCATATGCCCAACTAGAGAGCTTGCAATTCAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTGCAACTAGAAAACTTGAAGCTGAACGAATTGCCAAAGGGTTAAATCTATTGTGCCTCATGATTGACGAAGCTGACAGGATATTGGAAGCCAACTTTGAGGATGAAATGAAGCAGATTATTAAGATCCTCCCAAAGGTTGAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAACAAGGTCACAAATGAAGGATTGCTGCAGGGTTATGTGGTTGTACCCTGTGCCAAGCGATTTATTGTTCTCTATTCCTTTTTGAAGAGGCATCAGTCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCTGACATTCTTAATCTCATTCATATGAATTGTTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGACAAGGGGATCTTACTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCCGTGGACTGGATTGTGCAATATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGGAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCAGTGAAGGAATATGCATATGATGAAAAGAAGGTGGCAAATGTGCAGTCTCACCTGGAGAATTTGGTAGCCAACAACTTTTATTTAAACAAGATGGCTAAAGAAGCTTATAGATCATACATATTAGCATACAATTCACATTCCATGAAGGATATATTCAATGTTCACCGCCTTGATTTGCAGGCCGTTGCTGCTTCATTCTGTTTTTCAAACCCACCGAATGTGAGTGTGAACATAAAGAGCAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACATGGAATCAGCCACAGCAATCCTTATGGAAGAGGAAATGCTGACGATGAGCGGCAGTTTGTGAGGCATTAG 1611 0.4227 MAEPEDNLQASTMDETKKKKQKKKRGKKRSRDIVEEEHAEEEENGNNTDRDGESLNKKKEEEEVEGEIEVEEKKVKNNAGSGIMSSESFDSLGLSEPTYKAIMDMGFHHMTQIQARAVPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGATRKLEAERIAKGLNLLCLMIDEADRILEANFEDEMKQIIKILPKVEDLARLSFQTTPIYIDVDDGRNKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIHMNCSSIHGKQKQQTRTTTFFDFCKADKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVANNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPNVSVNIKSSSKQRKKMRKVDGSRHGISHSNPYGRGNADDERQFVRH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi444g00012 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 115 IPR014014 GO:0003724
Sebi444g00012 536 FunFam RNA helicase 267 497 - -
Sebi444g00012 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 272 IPR014001 -
Sebi444g00012 536 MobiDBLite consensus disorder prediction 43 73 - -
Sebi444g00012 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 410 IPR027417 -
Sebi444g00012 536 PANTHER RNA HELICASE 27 439 - -
Sebi444g00012 536 SMART DUF4217_3 431 494 IPR025313 -
Sebi444g00012 536 CDD SF2_C_DEAD 271 401 - -
Sebi444g00012 536 MobiDBLite consensus disorder prediction 495 536 - -
Sebi444g00012 536 SMART helicmild6 310 391 IPR001650 -
Sebi444g00012 536 MobiDBLite consensus disorder prediction 1 73 - -
Sebi444g00012 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 460 IPR027417 -
Sebi444g00012 536 Gene3D - 26 260 IPR027417 -
Sebi444g00012 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 283 430 IPR001650 -
Sebi444g00012 536 SMART ultradead3 106 274 IPR014001 -
Sebi444g00012 536 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 216 224 IPR000629 -
Sebi444g00012 536 Pfam DEAD/DEAH box helicase 111 213 IPR011545 GO:0003676|GO:0005524
Sebi444g00012 536 Pfam Domain of unknown function (DUF4217) 432 492 IPR025313 -
Sebi444g00012 536 Pfam Helicase conserved C-terminal domain 286 390 IPR001650 -
Sebi444g00012 536 Gene3D - 271 514 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi444g00012 Sebi-Chr444 102140 107236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi444g00012 70 410 Eukaryotic Initiation Factors Gene Family AT3G19760 26.790 5.76e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi444g00012 K13179 - gmx:100798885 889.026