Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi444g00008 ATGGAGCCCATGGACATCGTTGGCAAATCAAAGGAAGATGCCTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTGCCTCCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCATCAGAGTCCAATGAAGTCTGTAATAGAGAAGAAAAACGAACTATTGCACCTGAGCATGTATTGAGGGCTCTAGAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACCATGATGGACTGTCTTGAGGGAGCATCTGCAGCGCTCATTGATGGTCCTCTAAAGAAGCCCTCAAACCTGTCATGGTTTCCATCTAACCTAACCCTCTTGGACTCTTTAAGAGGTGGTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCTGAGGCACGTGCTAGGATGAATGGTGGGGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 567 0.4409 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVLRALEVLGFGEYIEEVYAAYEQHKLETMMDCLEGASAALIDGPLKKPSNLSWFPSNLTLLDSLRGGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi444g00008 188 PANTHER PROTEIN DR1 HOMOLOG 133 187 IPR044255 -
Sebi444g00008 188 Gene3D Histone, subunit A 4 175 IPR009072 GO:0046982
Sebi444g00008 188 FunFam Negative cofactor 2 beta 6 110 - -
Sebi444g00008 188 SUPERFAMILY Histone-fold 12 175 IPR009072 GO:0046982
Sebi444g00008 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi444g00008 Sebi-Chr444 82144 85636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi444g00008 1 184 CCAAT-DR1 Transcription Factor Family AT5G23090 68.280 2.89e-85 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi444g00008 CBFD_NFYB_HMF 1.5e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi444g00008 K21751 - gmx:100807912 289.656