Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi444g00002 ATGAAGATTCCAAAAATAACAAACAAGAGTCAGAAAAAGTTTCTAGGAGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCTTCACAGAAACTAAGGCTGTGGTTAGGGACTTTTGACAGAGCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACAAACTTTCCAAACCCAGGAATCATAAACACTCATGAGGAAGATTGCAGCATTTTGGGAAAGAATCCCAGGGCATACCAGATTCTTAAGCATGCAGTCATGAAGAACCATGCACTTCACTCATCATCTGTTTATTCCACCACAGTCATGCCTTGGAAAAATCAGAACATGAGAGATGAAGATCACACACTTGTTGAGGAAACTATAGTTTGCTTCATTCCTGAAGAAGGTACTGGGTGTAGTGGAATTTCATTTGGAAGTTCAAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCAGTGTCAAACATGA 525 0.4133 MKIPKITNKSQKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEEAALAYDCAARLLRGRNAKTNFPNPGIINTHEEDCSILGKNPRAYQILKHAVMKNHALHSSSVYSTTVMPWKNQNMRDEDHTLVEETIVCFIPEEGTGCSGISFGSSKVYSSVVVAPSFSASSQCQT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi444g00002 174 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Sebi444g00002 174 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Sebi444g00002 174 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 100 - -
Sebi444g00002 174 FunFam ethylene-responsive transcription factor RAP2-11 12 71 - -
Sebi444g00002 174 Gene3D AP2/ERF domain 12 71 IPR036955 GO:0003700|GO:0006355
Sebi444g00002 174 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Sebi444g00002 174 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Sebi444g00002 174 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Sebi444g00002 174 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Sebi444g00002 174 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi444g00002 Sebi-Chr444 8470 8994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi444g00002 10 71 AP2-EREBP Transcription Factor Family AT5G19790 69.355 4.94e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi444g00002 AP2 5.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi444g00002 - K09286 gmx:100807374 271.166