Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi443g00019 ATGGTTTTGCCAACTGAGTTCATAGTTGACATCGATTCATCGACAGAATCATGGCATATAGTTGCCAGGGTTGTTCGTTTGTGGAAAATTCCCAATTTCAACAATCCAAGGAACCCCCTTGATTTGGAGATGGTCCTTTGTGATGAAAGGGGTGGCAGAATTCACGCAGTTGTTAGAAGAACTTTGGTATACAAATTTCAATCCACCCTAATTGAGGGAGCTGCTTATTCCATTTCTAATTTTGGTGTTGGTGAAAATTCCGGTGAGTTCAAATATTCTATGCATTTGTACAAGGTCAACTTCGAGTACAATACAAGAGTTGTTTTGATGAGGGACTGCACTATTCCCCGATTTCAATTTTCATTTGTGTCTTTGGCGGACATCATGGCACCATACTTTGACAACAACTATTTAGTTGTGTTAACTGGTATTGGAACTGAGAAGGAGTATGAGAGGAATCGCAAGAAATATCGCATGAATGTGATGGAACTAGAAATAGATGGGTCAAAAATAGAATGTGCTCTGTTCGAAAATTACCTGGATGATTTGAATGCATTTCTTGGTTGTGGTAATACTACAAATGTGGTTGTTGTAATTCAGCTTGCAAAAGTGAAGTCATTCAAAGGGAAAGTGTCTCTGCAAAATGCTCTCCATGCTTCTAAGTTGATTTTCAACCTTGACTTTGATAAAGCTGTGGAATTAAGGAAAAGGCTTGAAGAAAACACTGAGTCTGTTTCCCAGCCTTTAAGTCAAATTGCTGAGGCTCCAAAGATGACTACTGAGGAGGAATTTCTGACTCATACTGTCATGAAGACTATTGAGGAACTAAAGGACACTAATGAGGAATGTTGTTGTATTGTAATGGCTACAATCAAGCATCTTATTGATGGAGAAGATTGGTGGTATAAGGCTTGCAGATGTGGCACTTCGGTTCTTTCTGATTCAAAAATGTACCGGCTGAAGGTTCGTGTCATAGATGGAACTGATTCTGCAACCTTTGTTCTTTTTGATCGAGATGTTGCATCTATTCTGGGTATAAGTTGTTCTGATTTGTTGGAGTCTACTGACCAGGCCCCTGAAAAACAATTCCCTTCTGAAATCTGTTCATTGGTTGATAAAACTTTTCTATTTAAAGTTGACAATAAGATTGTCTCCAACTCTCGGTTTGAGCAATCTTACAAAGTGAGGAAGTTGTGCTCGGATAATCAATTGATTCAGCAATTTAAAGACATTCATTTCTCAAACAAGGCTGATGACTCTTTAGACTTTGTTATTCCTTATGGGAAACTATTAGTTGGTGTTGATCAATGCAGTGGTTTGCCAAAGGAGGTGGTCCGTCATGTGTACAGATAA 1353 0.3865 MVLPTEFIVDIDSSTESWHIVARVVRLWKIPNFNNPRNPLDLEMVLCDERGGRIHAVVRRTLVYKFQSTLIEGAAYSISNFGVGENSGEFKYSMHLYKVNFEYNTRVVLMRDCTIPRFQFSFVSLADIMAPYFDNNYLVVLTGIGTEKEYERNRKKYRMNVMELEIDGSKIECALFENYLDDLNAFLGCGNTTNVVVVIQLAKVKSFKGKVSLQNALHASKLIFNLDFDKAVELRKRLEENTESVSQPLSQIAEAPKMTTEEEFLTHTVMKTIEELKDTNEECCCIVMATIKHLIDGEDWWYKACRCGTSVLSDSKMYRLKVRVIDGTDSATFVLFDRDVASILGISCSDLLESTDQAPEKQFPSEICSLVDKTFLFKVDNKIVSNSRFEQSYKVRKLCSDNQLIQQFKDIHFSNKADDSLDFVIPYGKLLVGVDQCSGLPKEVVRHVYR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi443g00019 450 Coils Coil 147 167 - -
Sebi443g00019 450 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Sebi443g00019 450 CDD RPA1_DBD_A_like 20 107 - -
Sebi443g00019 450 PANTHER OS03G0429900 PROTEIN 8 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi443g00019 450 SUPERFAMILY Nucleic acid-binding proteins 270 383 IPR012340 -
Sebi443g00019 450 Gene3D - 114 247 IPR012340 -
Sebi443g00019 450 Gene3D - 256 409 IPR012340 -
Sebi443g00019 450 SUPERFAMILY Nucleic acid-binding proteins 119 243 IPR012340 -
Sebi443g00019 450 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Sebi443g00019 450 CDD RPA1_DBD_C 273 382 IPR047192 -
Sebi443g00019 450 Gene3D - 6 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi443g00019 Sebi-Chr443 602524 604744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi443g00019 18 351 Core DNA Replication Machinery Family AT4G19130 23.706 3.42e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi443g00019 - - vun:114180582 363.229