Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi442g00045 ATGGCTGCTGGAAGACATGGCGGTTACCGCGAAAACGAGTTTAGGGACCGCGAGTCCAATTTGGATGTTTCGAGGCGCGGTCTCACGAATTCGAAAGAAGAGTATGATCGGGTTAGGAATGGTGGCCGTGATGTTGCGAGGGGTGGGAGCAGGGATTCGAGAGATAGGATTAGGGTGAGGCAGAAGGAGATTCGGGAAAGAGAAGCTGTCAGTAATGGCAATTACCGATCCTCTTCGAGTCGGAGTAACTCCGGAAGCAGTGGTGGACTTGGCCCTCGCCGGTGTGGTTTTTCTGCCAAGACTTTGGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGGTCTGATGATGCTATTGAATCAGAGTCAGGGGTGAAAGATGATGAGGTTGCAATGTTTGAAGGAAACAGGACTCTGTCGCCACCACCACAGGAGAGGAAAAGGAAATTTTCACCCATAGTGTGGGATCAGGATGACAAGGAAGTGAAGGAGTCATCCAAAGTTAGGGTTTCCACTACATCAGTGACTGCTCTTCCTCCTCTGCCTCAGCTGCCAAAAGAAATGCGTCCTGCCGGGAACAGAGAAACTGAGACTCCTGAGTTGCGTGCAGCAGCTAAGGTTACCTTGTCCTCTCCTTCAAGTTTGCAGTCCTTGTCTCCAAAACAGACTTGGGGTAATGATCAGGAAGCTGAGCAGCCAGAAGAAGGTGAAGATTATGTTCCAACACGTAATATATCATCCTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAGGGTGAAATCCTTGATGATGAGGAAATTCCTAAAAGGAGGAGGAGGCTGTCTCCTGAGTTGTTGGAGACTAGAGTGAGGAACAAGTTGTTGAGCCCGGATGAATCTAAAATAGAAAGTTCTGAAGGAGCTAGAGCCAAATCATCAGGATCTGAAGAAAGAGGAATTATCCATGGGAGAACATCCAGTGGTGATGATCATCCTGGTATTGAATCAGAGAATGATGACTATATGGAGGTTGATGCTCAGGGTATGAAAAGTGAAACCAGTGTTAGTCACTCAGATACAGAATCTGAAGATGAAGATGATAGGCGGGAGACTCCAGAACCTCCAGCTCCACCTCAAAGAACGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAATAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCTAGAGATAAGAAGACTGGGGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAAGAAGGCTTCCCACTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCACCACCCATCCATAGTTGATGTTAAGGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGGCAATGAAGCAACCATTTAGCCAGAGTGAAGTAAAGTGCTTAATGATCCAGCTTTTAAAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAAACCTGCTTCTAAATAATAGGGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAGTATGGGAGTCCCTTGAAACCATATACGCACCTGGTGGTTACACTTTGGTACAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTATTCAACAGCTATTGACATGTGGTCTCTTGGTTGTATAATGGCTGAACTATTGGCTAAGGAACCACTATTTAATGGGAAAACGGAATTTGATCAACTTGACAAGATTTTCAGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAACTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTCTGGTCTGGCTATCTGGCCTTCCTTGGTGACTTGTACTGTTACACAACATTTCTATTTTGTATTAACAACCAGAATGTTCCTTTCAGGTATAATCTCCTCCGTAAAAAGTTTCCTGCCACATCATTCACCTGGATCTCCAGTTCTTTCTGATTCGGGATTTGATTTGTTGAACAAGCTTCTGACTTATGACCCTGAAAAGCTGAAGCTGCTCTCAATCATGAATGGTTCCGTGAAGTTCCTCTCCCTAAAAGTAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGGCGGATGCGGAGAATATTGAAGAGCCCGGATCCTTTAGAGGAGCAGCGCCGGAAGGAGTTGCAGCAGGAAATACATCTGGGACGCTGCTTGCTGCTCAAGGTGTGGCATAA 2316 0.4499 MAAGRHGGYRENEFRDRESNLDVSRRGLTNSKEEYDRVRNGGRDVARGGSRDSRDRIRVRQKEIREREAVSNGNYRSSSSRSNSGSSGGLGPRRCGFSAKTLDREPGELSSESGSDDAIESESGVKDDEVAMFEGNRTLSPPPQERKRKFSPIVWDQDDKEVKESSKVRVSTTSVTALPPLPQLPKEMRPAGNRETETPELRAAAKVTLSSPSSLQSLSPKQTWGNDQEAEQPEEGEDYVPTRNISSSRWAAGDNSPGDEGEILDDEEIPKRRRRLSPELLETRVRNKLLSPDESKIESSEGARAKSSGSEERGIIHGRTSSGDDHPGIESENDDYMEVDAQGMKSETSVSHSDTESEDEDDRRETPEPPAPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLKGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLAKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQLPTLGGSGLAIWPSLVTCTVTQHFYFVLTTRMFLSGIISSVKSFLPHHSPGSPVLSDSGFDLLNKLLTYDPEKLKLLSIMNGSVKFLSLKVRIHAYISCSTCSGQADAENIEEPGSFRGAAPEGVAAGNTSGTLLAAQGVA 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi442g00045 771 SMART serkin_6 389 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00045 771 MobiDBLite consensus disorder prediction 265 341 - -
Sebi442g00045 771 CDD STKc_CDC2L1 383 703 IPR045267 GO:0004674|GO:0005524|GO:0006468
Sebi442g00045 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Sebi442g00045 771 MobiDBLite consensus disorder prediction 1 377 - -
Sebi442g00045 771 FunFam cyclin-dependent kinase G-2 isoform X1 374 471 - -
Sebi442g00045 771 MobiDBLite consensus disorder prediction 8 70 - -
Sebi442g00045 771 Pfam Protein kinase domain 389 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00045 771 Gene3D Phosphorylase Kinase; domain 1 374 471 - -
Sebi442g00045 771 SUPERFAMILY Protein kinase-like (PK-like) 381 703 IPR011009 -
Sebi442g00045 771 MobiDBLite consensus disorder prediction 71 89 - -
Sebi442g00045 771 ProSiteProfiles Protein kinase domain profile. 389 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00045 771 MobiDBLite consensus disorder prediction 207 229 - -
Sebi442g00045 771 MobiDBLite consensus disorder prediction 141 167 - -
Sebi442g00045 771 PANTHER CELL DIVISION PROTEIN KINASE 387 703 - -
Sebi442g00045 771 Gene3D Transferase(Phosphotransferase) domain 1 472 705 - -
Sebi442g00045 771 MobiDBLite consensus disorder prediction 351 369 - -
Sebi442g00045 771 MobiDBLite consensus disorder prediction 119 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi442g00045 Sebi-Chr442 804188 807706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi442g00045 380 620 Core Cell Cycle Gene Families AT5G10270 52.344 5.51e-85 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Sebi442g00045 Pkinase 7.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi442g00045 K08818 - gmx:100792524 967.992