Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi442g00024 ATGGATAATGGTTGTTTCCCTTCTCCACGCCTTGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGCTGAGGATCCTTGAAAAGATGCTTAAGAAATGCTTTTATGAAGTGACTACATGTTGTTTAGCAACAGAAGCTCTAAAAAAGCTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCAGTTATCATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTACCTCCTTAAGCCAATAAGGATGAAAGAACTGAGAAATATATGGCAACATGTCTTTAGAAAAAGAATGCATGAGGCAAGAGAATTTGAAAGTCATGAGGGCTTTGAGGGTATTCACTTGATGAGAAATGGGTCAGATCACTCTGATGATGGTAACCAGTTTTCTGTGGAAGAAATTACCTCAATAAAGAAAAGGAAAAATATAGATAACAATCATGATGATAAAGAATTTGGAGATCAATCTTCAACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCACCAGAAGTTTGTTAAAGCAGTGGATCAGATTGGATTTGATAAAATTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCTTGGCTAACTAGAGAAAATGTTGCCAGTCACTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAATGGAATGAAGCATTCAGATTTACCTTCAAAAGATCCTGGAAATTTCCCTTCAAAAGATCCAGGAAGTTTTAGTTTTTTGAATTCTAAAAACAAGCAACAAAATGATGTTGAAATTGACAGCATCAGATATTCAGATGGAACATTGCAACTTCAGATGGATGCTACAAGTCATGAAGCTGATCTCAAGGGAATTGTCTCAGAGCATACAATAGAAAAAAGATCTTTGACCATTGACATTCCTGACCAAAAGATAGGAAATAGTTCACAGATGGGCCTTAATCAACCTTTTGCATTTGTAGAGTCAGAAGCAAACCATGCAGTATTAGATAGCACCATACCAACACAGTACTCTTGGAGTGAAGTTCCAAAAAGGCCAATTAAAGAAGAACAAAAGACACTTGTTCAATTAAAGGATTGCTTCAGCCAGTTGCCATTACATGGTACACAGCATCACATTGAGCTTGATCAATCACAATCAATTGCTTCAATTATTTCCAATCCTTCTGTAACACAAGAGGTTGCTGCCTGTTCAGAAACCAAACCTTTGTATGCTGATTACAAAAGTGATTATGTCAGTCCTGTGAATTCAATAGGGTCTGCAGTTGAAACCTTTCCTATTCATTCCAAAAGCCTTATGGTAAATGATCAATCTCCAGAGTCCATTTTCAGTACAAACTTGGGCTTGAAAACACAGGGATTTGATCTTGGTTGCATTTCTGATATGGAATTTTACCAAAGGAACCTAGTTTTGGGTGATGAGGCAGTTTCTGCACCATTGGAGGAGGACTTACAATTCTTTTTGCTGCAAGGTGAATACTATAATATGGACTTTGGCTTGCAGAATATAGAGATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGTTCCTACCCACTTATATGATTCAGGAGATTATTCAGTATTAGATCAAAGTCTATTCATAGCATGA 1758 0.3766 MDNGCFPSPRLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEAREFESHEGFEGIHLMRNGSDHSDDGNQFSVEEITSIKKRKNIDNNHDDKEFGDQSSTKKARVVWSVDLHQKFVKAVDQIGFDKIGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSNGMKHSDLPSKDPGNFPSKDPGSFSFLNSKNKQQNDVEIDSIRYSDGTLQLQMDATSHEADLKGIVSEHTIEKRSLTIDIPDQKIGNSSQMGLNQPFAFVESEANHAVLDSTIPTQYSWSEVPKRPIKEEQKTLVQLKDCFSQLPLHGTQHHIELDQSQSIASIISNPSVTQEVAACSETKPLYADYKSDYVSPVNSIGSAVETFPIHSKSLMVNDQSPESIFSTNLGLKTQGFDLGCISDMEFYQRNLVLGDEAVSAPLEEDLQFFLLQGEYYNMDFGLQNIEMSEYYDPRLIAEVPTHLYDSGDYSVLDQSLFIA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi442g00024 585 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Sebi442g00024 585 CDD REC_typeB_ARR-like 20 134 - -
Sebi442g00024 585 Gene3D - 18 175 - -
Sebi442g00024 585 SMART REC_2 18 130 IPR001789 GO:0000160
Sebi442g00024 585 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Sebi442g00024 585 Gene3D - 196 259 - -
Sebi442g00024 585 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Sebi442g00024 585 FunFam Two-component response regulator 196 259 - -
Sebi442g00024 585 SUPERFAMILY CheY-like 17 144 IPR011006 -
Sebi442g00024 585 MobiDBLite consensus disorder prediction 261 298 - -
Sebi442g00024 585 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Sebi442g00024 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 303 IPR045279 GO:0009736
Sebi442g00024 585 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi442g00024 Sebi-Chr442 583866 587593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi442g00024 11 266 Response Regulator Gene Family AT2G25180 54.264 4.01e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sebi442g00024 Response_reg 2.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi442g00024 K14491 - gmx:100778324 951.429