Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi442g00012 ATGAAACTAATTAGACATCCAAATGTCATACGTATGTATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTATTGGAACTTGTGACTGGTGGAGAACTGTTTGATAAAATTGCAAACCATGGGAGACTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCATCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGGGACTTGAAGCCGGAGAATTTGTTGCTGGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGTGAGTATGGAAGATGGGCTACTTCACACAAAATGTGGTACGCCAAATTATGTTGCCCCTGAGGTGATCCACGACAAAGGCTATGATGGACCAAAGGCTGATCTGTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGTCTGGTTATTTGCCCTTTGACGATAACAACCTTGTGGCTTTATATAAAAAGATTTCCAAGGCTGAGTTTACTTGTCCTTCTTGGTTTTCTTCAAGTTCAAAGAAACTAATCAAGAGAATCTTGGATCCCAACCCTGCTACACGGATCACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCTGCCTCCTAGATTTTCAGAGGCCAATGTTAGTCTTGATGATGTAAATGCTATTTTCAGTGAAGCAGATGATTCACAAAATCTTATTGTGGAGAGGCGAGAAGAGGGGCCTGTTGCACCTATGACTATGAATGCATTTGAGCTTATCTTTAAGTCTCAAGGCCTCAACCTTGAAAATCTTTTTGGGAAACAGATGGCTGCATTGCCTCTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATCTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTTAACATGGTTGAGCTTCGGAAGTCTGGGGGAGATACTCTAGAATTTTATAAGTTCTACAAGAATCTATCTAATGGGCTAAGAGATATAATTTGGAAAGCAGAGCCAATCGATGAAGAAACAAATGGTGCTAGTACATCAACATAA 1101 0.3996 MKLIRHPNVIRMYEVMASKTKIYIVLELVTGGELFDKIANHGRLKEDEARKYFQHLICAVDYCHSRGVFHRDLKPENLLLDADGVLKVSDFGLSALPQQVRVSMEDGLLHTKCGTPNYVAPEVIHDKGYDGPKADLWSCGVILFVLMSGYLPFDDNNLVALYKKISKAEFTCPSWFSSSSKKLIKRILDPNPATRITIAEVIENEWFKKGYVLPPRFSEANVSLDDVNAIFSEADDSQNLIVERREEGPVAPMTMNAFELIFKSQGLNLENLFGKQMAALPLGFSVKKNNYKVKIQGEKTGRKGHLSIVTEIFEVAPSLNMVELRKSGGDTLEFYKFYKNLSNGLRDIIWKAEPIDEETNGASTST 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi442g00012 366 SUPERFAMILY Protein kinase-like (PK-like) 1 220 IPR011009 -
Sebi442g00012 366 Gene3D Transferase(Phosphotransferase) domain 1 1 266 - -
Sebi442g00012 366 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00012 366 Gene3D Kinase associated domain 1, KA1 275 351 - -
Sebi442g00012 366 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00012 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Sebi442g00012 366 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 336 - -
Sebi442g00012 366 Pfam Protein kinase domain 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00012 366 FunFam Non-specific serine/threonine protein kinase 1 248 - -
Sebi442g00012 366 Pfam NAF domain 252 286 IPR004041 GO:0007165
Sebi442g00012 366 ProSiteProfiles NAF domain profile. 250 274 IPR018451 GO:0007165
Sebi442g00012 366 CDD CIPK_C 256 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi442g00012 Sebi-Chr442 313548 317661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi442g00012 16 365 CBL-interacting serine-threonine protein kinases AT1G30270 71.693 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi442g00012 Pkinase 2.1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi442g00012 - - gmx:100788746 592.038