Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi442g00011 ATGACGTCACGTGGTAGCAGCAGTAGCAGGAGCCGTGTCCGTGTGGGAAAATATGAAATAGGTCGGACCCTGGGTGAGGGAAACTTTGCTAAGGTGAAGTTTGCACAGAACACTGAGACCGGAGAGAATGTGGCCATCAAAGTTCTTGACAAACAAAAAATTCTCAAGCACAATATGACAGCCCAGGTGATGGCTAGCAAAACAAAGATATACATTGTAATGGAACTTGTGACTGATGGCCATCTGTCTGATAAAATTGCAAGTCACGGGAGACTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCATCTTATTTGTGCTGTGGATTACTGTCACAGTAGAGGGGTTTTCCATAGAGACTTAAAGCCAGAGAATTTGTTGTTGGGTTCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACATCAACAAGTTCGAGAAGATGGGCTACTTCACACAACATGTGGTACACCAAATTATATTGCCCCTGAGGTGATCCAGGACAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTTTTTATTTTAATGGCTGGCTATTTGCCCTTTGAAGATAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCATGGTTTTCTTCAAAATCAAAGAAACTCATCAATAGAATCCTTGATCCCAATCCTGCTAAACGGATTACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCCTCCTAAATTTTCAGGAGCCAATGTTAGTCTTGATGATGTAAATGCTATATTCAGTGAAGCAGATGGCCTCAACCTTGGAAATCTTTTCGAGGAGCAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCCGCAGATGAGATAATTTCAAAAATTGAGGAAGCTGCAATGCCTTTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATGTATCAATAGTCACTGAGGTGTACAAGAATCTATCTAATGGGCTGAAAGAGATCATTTGGAAAGCAGAGCCAACCGATGAAGGAACAGATGGCTAG 1125 0.408 MTSRGSSSSRSRVRVGKYEIGRTLGEGNFAKVKFAQNTETGENVAIKVLDKQKILKHNMTAQVMASKTKIYIVMELVTDGHLSDKIASHGRLKEDEARKYFQHLICAVDYCHSRGVFHRDLKPENLLLGSNGVLKVSDFGLSALHQQVREDGLLHTTCGTPNYIAPEVIQDKGYDGAKADLWSCGVILFILMAGYLPFEDNNLMALYKKIFKAEFTCPPWFSSKSKKLINRILDPNPAKRITIAEVIENEWFKKGYVPPKFSGANVSLDDVNAIFSEADGLNLGNLFEEQMGLVKRETRFTSKCSADEIISKIEEAAMPLGFSVKKNNYKVKIQGEKTGRKGHVSIVTEVYKNLSNGLKEIIWKAEPTDEGTDG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi442g00011 374 ProSiteProfiles Protein kinase domain profile. 18 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00011 374 Pfam NAF domain 275 326 IPR004041 GO:0007165
Sebi442g00011 374 Gene3D Kinase associated domain 1, KA1 272 352 - -
Sebi442g00011 374 Pfam Protein kinase domain 62 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00011 374 FunFam Non-specific serine/threonine protein kinase 77 259 - -
Sebi442g00011 374 CDD CIPK_C 272 352 - -
Sebi442g00011 374 Gene3D Phosphorylase Kinase; domain 1 7 76 - -
Sebi442g00011 374 SMART serkin_6 18 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi442g00011 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Sebi442g00011 374 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 355 - -
Sebi442g00011 374 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Sebi442g00011 374 Gene3D Transferase(Phosphotransferase) domain 1 77 257 - -
Sebi442g00011 374 SUPERFAMILY Protein kinase-like (PK-like) 14 261 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi442g00011 Sebi-Chr442 306796 311022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi442g00011 3 370 CBL-interacting serine-threonine protein kinases AT1G01140 55.631 4.87e-179 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi442g00011 Pkinase 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi442g00011 - - qsa:O6P43_013013 574.704