Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi442g00010 ATGGGGGAAGAAAAGCAACGCAGCATACCGGCTTTGCCATGGATGCGAGACCCTGTTGACGTCACTCGCTGTCAAGAACTTCCCCTTGATTCCGTTCCTTGCCTCAATCCCAAGTTAAAATCAGCATTAGAGAACATGGGAATCTCGAACCTGTTTCCCGTTCAAGTCGCCGTTTGGCAAGAGACGGTTGGGCCTGGCAACTTCGAGCGAGACATTTGCGTTAACTCACCCACCGGAAGCGGCAAAACCTTGGCATACGCTCTCCCTATTGTGCAGTTACTATCGAAGCGCGTCACCAAATGCCTACGCGCCTTGGTCGTGGTTCCCACGCGCGACCTCGCATTGCAGGTTAAACGAGTCTTCGACGCCGTTGCGTCTCCGCTTGGCTTGCGCGTTGGCTTGGCTGTCGGTCAGTCTTCGGTCGCCGACGAGATTAATGAGCTCGTCGAGGTGCCGGCACGTGAGGCTGGCATGTGCTATGATACTCAACACGTTCTGCTTCCTCGGTTTCAGAGTAAGGTCGATATATTGGTAGCAACCCCTGGAAGGCTCATGGATCACATCAATACTACTAAAGGATTCACGCTTGAGCATCTTTATTATCTCGTGGTTGATGAAACAGATCGACTGCTACGAGAGGCCTACCAGTCCTGGCTGCCTACTGTGCTTGAATTGACCCAATCTAATGATGATAATTATTTTCAACCTGCTGATTCTTTTCTCCCTTGTTCTCTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGGTTCAAGGATAAACCTTACCCTAGGCTGGCAAAGATGGTTCTATCTGCAACATTAACTCAGGATCCAGGGAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAGAGCTGGGCAAACACGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTTTTATGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAAATCTGTGGATTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATCAATATCAAAGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACATTGAATGACTTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCGATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAAACTTATGTTCATCGGGCTGGTAGGACTGCAAGAGCTGGCCTCACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTCGACGATTTAAGAAGTTGATGCAAAAGGCTGAAGCTAGTTCATGTCCTGAGCATATTGTTCCACCCAGTTTGATTGAAGCACTTCATACTACCTACGAATCAGCACTGAAAAAATTTAAGGAGATAATTTTGGAGACTCGAAAGAAACCCAGTGATTAG 1494 0.4585 MGEEKQRSIPALPWMRDPVDVTRCQELPLDSVPCLNPKLKSALENMGISNLFPVQVAVWQETVGPGNFERDICVNSPTGSGKTLAYALPIVQLLSKRVTKCLRALVVVPTRDLALQVKRVFDAVASPLGLRVGLAVGQSSVADEINELVEVPAREAGMCYDTQHVLLPRFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTQSNDDNYFQPADSFLPCSLGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLVQLNLHHPLFLRAGQTRYRLPENLESYKLLCERKVKPLYLVALLKSLGEEKCIVFTKSVDSTHRLCKLLNCFGDLQINIKEYSGLQHQRVRSKTLNDFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGLTGRCFTLMSKDEVRRFKKLMQKAEASSCPEHIVPPSLIEALHTTYESALKKFKEIILETRKKPSD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi442g00010 497 FunFam ATP-dependent RNA helicase DDX51 16 298 - -
Sebi442g00010 497 SMART helicmild6 347 431 IPR001650 -
Sebi442g00010 497 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Sebi442g00010 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 473 IPR001650 -
Sebi442g00010 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 453 IPR027417 -
Sebi442g00010 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Sebi442g00010 497 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Sebi442g00010 497 CDD SF2_C_DEAD 308 439 - -
Sebi442g00010 497 Gene3D - 307 497 IPR027417 -
Sebi442g00010 497 Gene3D - 16 298 IPR027417 -
Sebi442g00010 497 CDD DEADc_DDX51 39 295 - -
Sebi442g00010 497 SMART ultradead3 47 311 IPR014001 -
Sebi442g00010 497 PANTHER RNA HELICASE 35 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi442g00010 Sebi-Chr442 300360 305615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi442g00010 57 446 Eukaryotic Initiation Factors Gene Family AT3G13920 23.869 8.18e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi442g00010 K14807 - qsa:O6P43_013012 748.429