Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi441g00047 ATGCCAATGTCTCTGAAACATAAAATGTCATACGGCTCCAGTAGGTTCAGCATTGAGCCTGTGCAAAATCTGGAGCCATGTTGCTTCCTGTCAGCTGAGAACCTAGAAAACTACTCATCCTCTGATAACAGTAGCCATGCAACCTATCCTTCAGTTCATCCTTTAAAACAATATTGCACCCTTGAATCTTCTACAAATAACAGTTTCCCTTGTCAAAATTCTCCATCAACTGTCAGTTTCTCACCAAACAATAGCCCAGTCTCAAAGCTACAGTCAAAATCTTATGTATTGAAGTCACAGCATTCTGTTGAAATTATTAATGATTCACTGGAGAATGAATCTTGTTTGACACATAATCATGATGACCTGAAGCACAAGATAAGAGAGCTTGAAAGTGCTATGCTGGGGCATGATGCAGATGTTATGGACATATATGATAGTGTAATTCCAGAAGAATCTGATTCACTTTTGTTAGAGGCAGAGAAGTGGAAGAAAATGATGGAGGTGATATCTAGAGGGGATTTGAAAGAAATGCTTTGCACTTGTGCCAAAGCATTGTCAGTGAATGATTTGGAGACAACTGAATGGTTGATGTCTGAGTTGCAAAAAATGGTGTCTGTTTCAGGCAACCCAATCCAAAGGTTAGGAGCATACATGTTGGAGGCTCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAGGCCTTGAAATGCAAAGAGCCTACTGGTAATGAACTCCTTTCTCACATGCATGTACTTTATGAAATCTGTCCATATCTCAAATTTGGGTACATGTCAGCAAATGGGGTAATAGCTGAAGTCATGAAGGATGAAAGTGAAGTACACATAATTGATTTTCAGATTAACCAGGGAATCCAGTGGGTAAGCCTAATCCAAGCTCTTGCTGGAAGACCTGGAGGACCCCCAAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCTAGGGGAGGGGGGCTTGATATAGTTGGAGAAAGATTGTCAAGGCTTGCACAGTCATATAATGTTCCCTTTGAGTTCCATGCTATTGGAACTTCTCCTACTGAGGTACAATTTGAAGACCTTGAACTTCAACCTGGTGAAGCTATTGCTGTGAATTTTGCTATGATGCTGCACCATGTACCAGATGAAAGTGTGGATAGTCAGAATCATCGTGACCGGTTGTTGGGAATGACAAAGTGCTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAATGACCTCCAATTCTTCCCTCGTTTCATTGAGACAATGAACTACTACTTGGCAGTTTTTGAATCAATTGATGTTGCTCTTCCAAGGGAACACAAAGAAAGGATTAATGTAGAACAGCATTGTTTGGCTAGAGAAGTTGTCAACTTAGTGGCGTGTGAAGGAGCAGAAAGAGTGGAACGTCATGAGCTTCTGAAGAAGTGGAGATCACGTTTCACAATGGCTGGATTCACACCATATCCATTGAGCTCCTTTATTAATTGTTCAATAAAAAATCTTCAGGAAAACTACCAAGGACATTACACTGTAGAAGAGAAAGATGGTGCTCTATGTCTTGGTTGGATGAATCAAGTCCTTGTTACCTCTTGTGCTTGGAGGTGA 1638 0.409 MPMSLKHKMSYGSSRFSIEPVQNLEPCCFLSAENLENYSSSDNSSHATYPSVHPLKQYCTLESSTNNSFPCQNSPSTVSFSPNNSPVSKLQSKSYVLKSQHSVEIINDSLENESCLTHNHDDLKHKIRELESAMLGHDADVMDIYDSVIPEESDSLLLEAEKWKKMMEVISRGDLKEMLCTCAKALSVNDLETTEWLMSELQKMVSVSGNPIQRLGAYMLEALVARMASSGSTIYKALKCKEPTGNELLSHMHVLYEICPYLKFGYMSANGVIAEVMKDESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGFDDSTSAYARGGGLDIVGERLSRLAQSYNVPFEFHAIGTSPTEVQFEDLELQPGEAIAVNFAMMLHHVPDESVDSQNHRDRLLGMTKCLSPKVVTLVEQESNTNDLQFFPRFIETMNYYLAVFESIDVALPREHKERINVEQHCLAREVVNLVACEGAERVERHELLKKWRSRFTMAGFTPYPLSSFINCSIKNLQENYQGHYTVEEKDGALCLGWMNQVLVTSCAWR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi441g00047 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Sebi441g00047 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 123 539 IPR005202 -
Sebi441g00047 545 Pfam GRAS domain family 176 545 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi441g00047 Sebi-Chr441 536944 538581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi441g00047 56 545 GRAS Transcription Factor Family AT5G48150 59.879 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sebi441g00047 GRAS 5e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi441g00047 - - gmx:100779977 943.725