Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi441g00046 ATGGACGCTGCTGCTACCAACTCCGGCGAACCCCACTCGAGTTCGGAGCTCCGGGTAGATGGGGCACATGATGATCCAAATCGAACAGGGTCGGGTCAAAATTCAACAGCAAGGTACAAGCTTTTGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTGAGTCCGACGTCGTTTTTGGAGTCCCCAGTTCTACTTTCCAACATGAAGGTGGAGCCTTCACCCACTACAGGGTCCCTTCCTAAGCCTCACCAAACAGTTCATGGTTCTATGGCTTCTACTGCATCCGCTACATTTCCCGTAACCAGTGCATGTTTTAATACCAATACTGTTGATGACAGAAGATCAAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGCTCCTGCAGACTTCAACAACCATGTAAGTCAACAATCTACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCCTCTTCACCATTAGTTGAAAGTGATATTTCTGTTCCATCTAATGAATTGAGCCTATCATCACCTGTTCAAATGGTTAGTTCTGGGGCTACTGCTCCTCTTGATGTCGATTTGGATGAAATTAACCACAAAGGCAATACAACTACTGGGCTTCAAACATCACATGCTGAAGTTAGATGCAGTGGACTTTCGGTTGCAACCGATAAATCATCTAATGATGGATACAATTGGCGAAAATATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGCTACTACAAATGCACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAGCGCTCTCATGATGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAGCCGAAACTCTGCTGGTACAATTATGTCTATGCAAGGAGAGAGATCTTTGGCTGGCCGAGATGAGAAAGCATCCAATATGTATAATCAGTCGTCTCATGCTGCTGAGCCCAACAGTACTCCAGAGCTATCGCCTGTAACAACAAATGATGATAGTTTAGAGGGTTCCGCATTTGTGACAAACAGGACAAATGACGAGGTTGATGATGAAAATCCTTTCTCAAAGAGAAGAAGAATGGAACTTGGAAATGCTGAAATCATTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTGTGAGTGAAGTTGATATATTGGATGATGGGTACCGCTGGCGTAAATATGGACAGAAGGTGGTGAGGGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAATACTGGTTGCCCTGTAAGGAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCAGTAATAACCACATATGAGGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGAATTAGCTCAGCTGCTGATAGTAGTAGATCAAATGGGCAAGGGAAAATGCTTCTCTCTGAATTTGGGGACAGTCAAACTCACACTACTAGCAATTCCAATTTCAAGTTTGTTCATACTACCCCAGCTCAGGTATACTATGGTGTTCTAAATAACAGCACAAATCAATATGGTTCTAGAGAAAATAGGAGTGATGGTCCACCTTTAAACCATTCCTCCTATCCTTGCTCACAGAACATGGGAAGAATACTAATGGGTCCATGA 1662 0.4386 MDAAATNSGEPHSSSELRVDGAHDDPNRTGSGQNSTARYKLLSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPKPHQTVHGSMASTASATFPVTSACFNTNTVDDRRSSFFEFKPHSRSNMAPADFNNHVSQQSTQVEGPGKAQSFASSPLVESDISVPSNELSLSSPVQMVSSGATAPLDVDLDEINHKGNTTTGLQTSHAEVRCSGLSVATDKSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSSRNSAGTIMSMQGERSLAGRDEKASNMYNQSSHAAEPNSTPELSPVTTNDDSLEGSAFVTNRTNDEVDDENPFSKRRRMELGNAEIIPVVKPIREPRVVVQTVSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEESDTISLDLGMGISSAADSSRSNGQGKMLLSEFGDSQTHTTSNSNFKFVHTTPAQVYYGVLNNSTNQYGSRENRSDGPPLNHSSYPCSQNMGRILMGP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi441g00046 553 Gene3D WRKY domain 222 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 MobiDBLite consensus disorder prediction 282 301 - -
Sebi441g00046 553 ProSiteProfiles WRKY domain profile. 398 455 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 SUPERFAMILY WRKY DNA-binding domain 229 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 MobiDBLite consensus disorder prediction 1 39 - -
Sebi441g00046 553 Gene3D WRKY domain 390 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 FunFam WRKY transcription factor 33 390 456 - -
Sebi441g00046 553 MobiDBLite consensus disorder prediction 520 544 - -
Sebi441g00046 553 SUPERFAMILY WRKY DNA-binding domain 395 456 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 MobiDBLite consensus disorder prediction 322 366 - -
Sebi441g00046 553 FunFam WRKY transcription factor 221 292 - -
Sebi441g00046 553 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 Pfam WRKY DNA -binding domain 404 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 MobiDBLite consensus disorder prediction 322 356 - -
Sebi441g00046 553 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 463 IPR044810 GO:0003700
Sebi441g00046 553 SMART WRKY_cls 403 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi441g00046 553 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi441g00046 Sebi-Chr441 527327 532359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi441g00046 42 553 WRKY Transcription Factor Family AT4G26640 54.991 3.54e-177 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi441g00046 WRKY 3.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi441g00046 - - gmx:100816583 929.858