Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi441g00026 ATGGACGAGGTCCAAGAACCGGCGCCGGATCCTCAACCGGCGGTTGAGAACGGCGGAGCTGTGGAACTGGATGTTGACGAGCGGTGCAGTAAGAAGGCGAAGGTGGAGAGTGCATCAGAGGCTGAATTGAAGAGAGTGGCGGAGATTGTGTTGGTTTTGTCCACTATGGCGACGATGCGAGGGGGAAGGAAGCCTACCGATGTGGAGGTTGAACTTATGAGAGAGGCTCGAACCAAGCTTGCACACCTCTGTCAGGGGCTAGCTCCCAAGGATATTGTCGCCAAGGAAGCTATTGACACTGTCATCGAAGATCTTGGCTTGAACGCTAAGATTAAGGACCAGAGGTTAGGGTTTCGAGCTCCCAAGATGTCCATTGCCGAGAGGTATTCGCACTCTAAGTGGAAGATGGAGGAATCAAAGAAGTTTTCTGCACCTTCTACACCATATGCATCTCAGCCCTTGCAAACAAGTATAGCTGGAACAGTCGACAACCGTGTGCCAACACATGCTGTTCGAATGGTTGCGTCTGATAAACCAAGCCACGCAGCATTCTCTTCTACAGGAACTGTAGTGTCTATTCCTCCCCATGTTGCTGTAGGATCTTCTGTGGCATTGCAATATCAAACAACCAACAATGAAGTGAGATCACCTGTGGTTTCTGGTGTAATGCCTAGCAGTCACTTGGGGAGAAATTCAACTTCCTTAGCATTGCCTAAAGTTGATGGAGGATCAAATGGGTCTCCTTATGTGCTGCAAGTCCAAGCAAATTCATCAGCAAACCAGCCATTGGTGAATGCTCCAACATGGTCAATACAGACTCAACCTACATCATTAGCCAGAAGTGCATCAGAAAACAAGGTGCTTACTCTTAACTCAGCCAAGGTTGAAGTAGCAGCTGATGTAACCGTATCAAGGGCAGGGCCTCAAATAACATCAGATCAGAGCTTTAGACCATTTATTACTCAAACAGCACCTGGAAATTTGTCTACTATGCACCAGCCATTGCAGGGCATGAACATGGTTCAACCTCCTTTGATTCCTAGTCATGCTGACATTGCAAAGATTGTCCAGAAATTGTTACTGCCAAAGCTTCCTGACCATCCCACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAAATGTGTGAGCTCACTGTCAATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCGGTCTTAAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTAAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAATACGGTCGTGTCATGAGATCCTCAAACACACCACCAAAATTGCCCTCTAATACAGGTGGTATTCAGCCATCTTCAGAGAAGAAAGAAGGGAGCTTAGATCCAAAGGTCAGCCCTCAGATGTTAACAACAAATGGGAGCTCTCTTCCAACTGTTTCCAGTGGCAATCACAATGTTGAGCTGTCATCTGACTCAAAGACCCCAGATATGAAAGATGTACAAGGTACCAGCATTTCATCTAGCATTGAAATTATTGGTGAGAAGCCTGATCCAAACATCTGTATGAAATCCCTTAGTGCAGCTGCTAGTCCTTCCACTGGCTTGCCAGGTGAAAGTTCTTCTCAACAAATAAATTCTGAGGCTTCAATCTGTAAAGAGACTTCAGAACCTGAAACTCTTCCTAAATTATCTGAGCCGGCTAAATGTGAAAATTTACAATCACCACAAGATTTTCAAGTTGAACAGACAGTGTCACAAGACAATGCTGAAGTATCATCAGATAAACAAGTTAACGGTAGTTTTATGATTAGTAACCAAAATGAATCTCATGGAGGAGAAAATTTAACTTATGATATCAAGCAAGATGAATCATCAGATAAACAAGTTAACAGTAGTTTTATGATTAGTAACCAAAATGAATCTCATGGAGGAGAAAATTTAACTTATGATATCAAGCAAGATGACCTAGATGTTGCACAAGAAACTTTTGTTGGAGGTTCGGGAACTAATACTGAAGGTAGACAGCACTCTGCATTATCCTCAGATAGCTCACATGTTGTAGAATGGATTGGTGATGTTGTACAGCTTGTAGATGAGAAAAAGTTTTACCAATCTTGTTCTGTTGATGGAGTAACATATAGGCTGCAGGGTCATGCTCTTTTCCCATCCACCCATGGCAAAGAAACACCTTCTAAACTTCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAACGTTGGTCATCCTTGTATATCTGAAGTTAATGAGGTTTATGAGTCTAATAGTGATAGAATTGAAATGGCCAGCTCTATTCGAGGCCCATGTGAAGTCCTGCCATCTGATAAATTCAAACAAGAAAATGACAGGCGATGTCAGTTTGGAATTGAGGAAAGTGATTTTGTACAGCCCATTTTCCTTTGCAGTGGAGGGAATAGACCAAAAGAAAAACTCAGTGGAAAAAGGGGAACATCCATTCTAGAAACATACTGCAAGATGGCCATACATGCCAAGTCTATGCTTCACCTTCTGAAAGAAACCCTAGACAGAGTTGAGGTGAGTGTTCCTGCAAGTGAGAGTGGCCCTTTTGTGGTGGTGGACTTGGGGTGTTCATGTGGGAACAACACCATTAACGTTGTGGATGTCATCATCAAACATATCATCAAACGCTATGAGGCTTTGGGATGTGATCCACCAGAGTTCTCTGCTTTCTTCTCTGACCTTCCTAGCAATGACTTCAACACTCTCTTTCAGCTCCTTCCTCCTCTTGGTGTTAGCATGGAAGAATGTTTAGCTGCCAATAACCACCGCTCTTACTTTGCCGCCGGAGTTCCCGGTTCCTTCTACCGGAGACTTTTTCCGGCCAGGTCCATTCATGTTTTCCACTCAGCCTTTTCTTTGCATTGGTTATCTCAGGTCCCAGAATCTGTGGTGGAGAAGAGATCAATTGCATACAACAAAGGCAGGGTGTTTATCCATGGTGCTGATGAAAGCACAGCAAATGCATACAAGAAACAATTCCAAACAGACTTAGCAGGCTTCCTTAGTGCAAGGTCAGTGGAGATGAAAAATGGGGGGTCCATGTTCTTAGTTTGCTTAGGCAGAACCTCAGTGGACCCCACAGACCAAGGTGGGGCTGGCCTTCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCATGAGGGATTAATTAGCAGTGAAAAAAGAGACAATTTTAACATTCCAGTTTATGCACCAAGCCTACAAGATTTTAAGGAAGTGGTTGAAGCTAATGGTTCATTTGCCATAAACAAGCTTGAGGTATTCAAAGGAGGAAGCCCTCTTGTGGTGAACCAACCAGATGATGCAACTGAAGTAGGCAGGGCACTAGCCAACAGCTGCAGGACTGTGTGTGGAGTCCTTGTTGATGCACACATTGGTGAAAAGCTCAGTGAAGAACTGTTTCTTAGAGTGGAGCACAGAGCCACTGCTCATGCCAAGGAAACACTAGAGAAACTACAATTCTTTCACATAGTGGCATCCCTTTCTTTTGCTAAATGA 3639 0.4405 MDEVQEPAPDPQPAVENGGAVELDVDERCSKKAKVESASEAELKRVAEIVLVLSTMATMRGGRKPTDVEVELMREARTKLAHLCQGLAPKDIVAKEAIDTVIEDLGLNAKIKDQRLGFRAPKMSIAERYSHSKWKMEESKKFSAPSTPYASQPLQTSIAGTVDNRVPTHAVRMVASDKPSHAAFSSTGTVVSIPPHVAVGSSVALQYQTTNNEVRSPVVSGVMPSSHLGRNSTSLALPKVDGGSNGSPYVLQVQANSSANQPLVNAPTWSIQTQPTSLARSASENKVLTLNSAKVEVAADVTVSRAGPQITSDQSFRPFITQTAPGNLSTMHQPLQGMNMVQPPLIPSHADIAKIVQKLLLPKLPDHPTWTPPSRDYMNKALTCQMCELTVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGIQPSSEKKEGSLDPKVSPQMLTTNGSSLPTVSSGNHNVELSSDSKTPDMKDVQGTSISSSIEIIGEKPDPNICMKSLSAAASPSTGLPGESSSQQINSEASICKETSEPETLPKLSEPAKCENLQSPQDFQVEQTVSQDNAEVSSDKQVNGSFMISNQNESHGGENLTYDIKQDESSDKQVNSSFMISNQNESHGGENLTYDIKQDDLDVAQETFVGGSGTNTEGRQHSALSSDSSHVVEWIGDVVQLVDEKKFYQSCSVDGVTYRLQGHALFPSTHGKETPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNVGHPCISEVNEVYESNSDRIEMASSIRGPCEVLPSDKFKQENDRRCQFGIEESDFVQPIFLCSGGNRPKEKLSGKRGTSILETYCKMAIHAKSMLHLLKETLDRVEVSVPASESGPFVVVDLGCSCGNNTINVVDVIIKHIIKRYEALGCDPPEFSAFFSDLPSNDFNTLFQLLPPLGVSMEECLAANNHRSYFAAGVPGSFYRRLFPARSIHVFHSAFSLHWLSQVPESVVEKRSIAYNKGRVFIHGADESTANAYKKQFQTDLAGFLSARSVEMKNGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVHEGLISSEKRDNFNIPVYAPSLQDFKEVVEANGSFAINKLEVFKGGSPLVVNQPDDATEVGRALANSCRTVCGVLVDAHIGEKLSEELFLRVEHRATAHAKETLEKLQFFHIVASLSFAK 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi441g00026 1212 Pfam SAM dependent carboxyl methyltransferase 888 1208 IPR005299 GO:0008168
Sebi441g00026 1212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 445 IPR013083 -
Sebi441g00026 1212 Gene3D - 1002 1194 IPR042086 -
Sebi441g00026 1212 Gene3D - 705 852 IPR043151 -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 1 22 - -
Sebi441g00026 1212 SMART PHD_3 383 432 IPR001965 -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 596 630 - -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 452 468 - -
Sebi441g00026 1212 Gene3D Vaccinia Virus protein VP39 866 1138 IPR029063 -
Sebi441g00026 1212 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 839 - -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 442 516 - -
Sebi441g00026 1212 SUPERFAMILY FYVE/PHD zinc finger 374 439 IPR011011 -
Sebi441g00026 1212 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 873 1209 IPR029063 -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 479 516 - -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 542 568 - -
Sebi441g00026 1212 ProSitePatterns Zinc finger PHD-type signature. 384 431 IPR019786 -
Sebi441g00026 1212 ProSiteProfiles Zinc finger PHD-type profile. 381 434 IPR019787 -
Sebi441g00026 1212 Pfam PHD-finger 384 432 IPR019787 -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 596 629 - -
Sebi441g00026 1212 MobiDBLite consensus disorder prediction 542 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi441g00026 Sebi-Chr441 254129 274230 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi441g00026 Methyltransf_7 5e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi441g00026 - - gmx:100807139 1229.54