Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi440g00060 ATGACTAGGAGGAGGGTGAAACTTGCATATATCTCTAATGACTCAGCAAGAAAAGCAACATACAAGAAAAGGAAGAAGGGTATCATAAAGAAGGTCAGTGAGCTCACCATTCTTTGTGGGATTCCAGCGTGTGCTATAATTTGCAGTCCTTTTGATTCTCAAATAGAGGTCTGGCCAAACCAAGAAGGAGTCGAGCAGGTGATTGAGAGGTATAAGAACACATCTATGATAGATGAAAACAAGAATGTAAACCAAGAGAGCTTCCTTATGCAGAGTATTGCCAAAGCCCAAGACCACCTGAAGAAGTTGCACCGGGACAACCATGAGAAGGAACTAACCATGGCTATGTTCCAACACATGCAAGATGAAAACTTGCCAAACATGTCCTTTGAAGATGCGAATGCTCTCAATAAGCTGATTGAGAAGAATTTGAATGACATTGAAATTAAGATTGCTAAGCTTAATTGA 468 0.4038 MTRRRVKLAYISNDSARKATYKKRKKGIIKKVSELTILCGIPACAIICSPFDSQIEVWPNQEGVEQVIERYKNTSMIDENKNVNQESFLMQSIAKAQDHLKKLHRDNHEKELTMAMFQHMQDENLPNMSFEDANALNKLIEKNLNDIEIKIAKLN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi440g00060 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi440g00060 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi440g00060 155 PANTHER MADS BOX PROTEIN 3 148 - -
Sebi440g00060 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Sebi440g00060 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi440g00060 155 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi440g00060 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sebi440g00060 155 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Sebi440g00060 155 Gene3D - 13 139 IPR036879 GO:0003677|GO:0046983
Sebi440g00060 155 Coils Coil 130 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi440g00060 Sebi-Chr440 846678 847145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi440g00060 1 154 Type I MADS-box Gene Family AT5G48670 48.718 5.61e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi440g00060 SRF-TF 5.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi440g00060 - - gmx:100792290 196.438