Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi440g00050 ATGGAAGAAGCAGCAGCAACCTCTTCTCGAAGAAACGCGAAGAGGAAGAAGCGAGCCCTGGCGGCTGGGGACCCTGAACTCGAACGTCTCAACACTCTGCCTTGGAACTCTGCTCTTCCTCAAAACGATGATGATGACCCCTTTTCCCTCTTCATTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTTGAGGAGATTGATGAGGCCGAGTATGGTTTGGATATTCCTGAACCCGGAGAGGCCAACAGGAAGCAGAAGTCTAAACAGGACAAAAAATTGAAGAAACAGAAGCAAGATGGGGTTGATGGTGCTGGTAGTGATGTGCTTGAAGCGGAATCTAATGGAGAAATGGTTGAGGGTGAGGGTCTAGATACTGATATGAAGGATGATATTGGGGAAGAGAACATTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGACAGCGATATACAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTCGCATTTGGTTTGCCGATTTTGCAACGCATTTTGGAGGAGCGAGAGAAGGCTTCAAAGATGGCTGATGAAAAGGCTGAAGAAGCTGAAAAGTATGCTCCTACAGGCATTTTGAGGGCTCTTATTATTGCTCCGACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGAGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTGGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCATTGTCTTTTTTTGTGCTTGATGAGGCTGATAGAATGGTGCAAAATGGTCATTTTAAGGAGTTGCAGTCAATAATTGACATGCTTCCCATGTCCAATATCTCCGCTGAAGATAATTCACAACACGCACAAAGTTGTGTTACAGTTTCTAGCTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTGAAGCGTGGTTTGATTCAACAAAAGCAATCATTAACAAATGGATTGAATTCTATTGAGACTCTTTCTGAGCGAGCAGGGATGAGAACCAATGCTGCAATTATTGATCTTACTAATCCATCAATATTAGCAGCTAAACTTGAGGAATCATTTATTGAATGCAGGGAGGAAGATAAAGATGCATATGTGTATTATATTCTGACTGTCCATGGACAAGGCCGCACTATAGTTTTCTGTACGTCAATTGCAGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCATTAATGTCTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGCTTTCGTGAAAATGAAAACGGCATACTTGTTGCTACAGATGTTGCTGCAAGAGGTCTTGACATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGAAGAAGGTTGTAGCATTGCTTTAATCTCACCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATTCCTTTCAGCGGTTTCCTTTAGAGAATTCATACATGCCAGAGGTCCTAAAAAGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGATTCCCAGGAGAGGGCTGAGAAAAGTTGGTTTGATCGGAATGCTAACTCAGTGGAATTAGTTACAGAAAATTATGACAGTGAGGAGGAACAATCATTTCAAAGTGGGATCTTGGGGTGGGCTGTATCTACTGCTAGTAGTTATTTGGATGAAGTTGCTGATAGATCCCAAGAGCAAGCTGGTGTCACACCCCTCATGCAGGAACAATTGCAACAATTAGCAAGGCAAAAACTAAGTGATCATCGCAAAAAGGGAAAAATGGTTGTGATTGGTCAAGAATGTGTGGAAGCGCTTCAGGCACTTCGAAGTGCTGGTGAAGAGAACCTAGCTTCTTGTGCCGGAAATGTTAGGAATTCAGATTAG 2187 0.428 MEEAAATSSRRNAKRKKRALAAGDPELERLNTLPWNSALPQNDDDDPFSLFIGSNELEGGFLSLEEIDEAEYGLDIPEPGEANRKQKSKQDKKLKKQKQDGVDGAGSDVLEAESNGEMVEGEGLDTDMKDDIGEENIDETEFYAWNELRLHPLLMTAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKASKMADEKAEEAEKYAPTGILRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISAEDNSQHAQSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLIQQKQSLTNGLNSIETLSERAGMRTNAAIIDLTNPSILAAKLEESFIECREEDKDAYVYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASEEGCSIALISPKDTSKFASLCKSFSKDSFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQERAEKSWFDRNANSVELVTENYDSEEEQSFQSGILGWAVSTASSYLDEVADRSQEQAGVTPLMQEQLQQLARQKLSDHRKKGKMVVIGQECVEALQALRSAGEENLASCAGNVRNSD 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi440g00050 728 MobiDBLite consensus disorder prediction 78 102 - -
Sebi440g00050 728 MobiDBLite consensus disorder prediction 1 52 - -
Sebi440g00050 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 566 IPR027417 -
Sebi440g00050 728 CDD DEADc_DDX24 154 419 - -
Sebi440g00050 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 392 IPR014001 -
Sebi440g00050 728 Gene3D - 427 646 IPR027417 -
Sebi440g00050 728 SMART ultradead3 162 394 IPR014001 -
Sebi440g00050 728 Coils Coil 203 223 - -
Sebi440g00050 728 SMART helicmild6 469 550 IPR001650 -
Sebi440g00050 728 Pfam DEAD/DEAH box helicase 167 375 IPR011545 GO:0003676|GO:0005524
Sebi440g00050 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 338 IPR027417 -
Sebi440g00050 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 429 597 IPR001650 -
Sebi440g00050 728 Pfam Helicase conserved C-terminal domain 441 549 IPR001650 -
Sebi440g00050 728 CDD SF2_C_DEAD 430 559 - -
Sebi440g00050 728 Gene3D - 114 393 IPR027417 -
Sebi440g00050 728 PANTHER RNA HELICASE 91 615 - -
Sebi440g00050 728 MobiDBLite consensus disorder prediction 72 130 - -
Sebi440g00050 728 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 314 322 IPR000629 -
Sebi440g00050 728 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi440g00050 Sebi-Chr440 720747 729328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi440g00050 114 575 Eukaryotic Initiation Factors Gene Family AT1G72730 26.261 4.41e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi440g00050 K14805 - gmx:100806018 1113.98