Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi440g00040 ATGAATATGATGCGACGGCTGAAGAGCATTGCATCTGGGAGGACTTCAGTTTCTTCAGATCCTGGAGGGGATTCTAACACCAAAAGAGCTAAGTTTGATCAAGAAACTGAAGTGAAGGTCAATGAGGAAACAAATACTTTAGACAACAAAGATCAGGAGCAGCATGTGGATGTACCAAAAGAAGTAACGGTTGGCACATCCAATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGTTTCGATGAACTTCCAAAGGAATTACATGAAATGAAAATTAGAGATGAGAAAAGCAAAATCAACAATGAAAAGGATATGGAAGCAACTATATTGAGTGGTAACGGAACAGAAGCTGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCAGGCCAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATAAAGAAGGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACGGTTGATCATCCTAACATTGTTAAACTAAAGCACTGTTTCTTTTCAACCACCGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTACCTGAAACTGTCTACAAAGCTTCAAAGCACTATATTAGGATGCACCAACATATGCCTATGATTTATGTGCAACTTTATACATACCAGATATGCCGCGCATTAAATTATTTACATGAAGTGCTTGGCGTCTGCCATCGTGACATCAAACCCCAGAACCTATTGGTTAATCCCCAGACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCTCGATATTACAGAGCTCCAGAACTTATCTTTGGAGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGCTCCTCCTAGGACAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTAGTGGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCGCACCCATGGCATAAGGTTTTTCACAAGAGAATGCCACCTGAAGCAGTGGATCTTGTGTCGAGGCTGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCATTCTTCAATGATCTGCGAGACCCAAATGCACGCTTGCCAAACGGACAACCACTACCTCCCCTGTTCAATTTCACACCTCAAGAACTGGCAAATGCACCTGATGAGTTGCGACAACGTCTCATTCCTGAGCATGCAAGGAGCTGA 1344 0.4234 MNMMRRLKSIASGRTSVSSDPGGDSNTKRAKFDQETEVKVNEETNTLDNKDQEQHVDVPKEVTVGTSNVSTVARTEKSGFDELPKELHEMKIRDEKSKINNEKDMEATILSGNGTEAGQIITTAIGGRDGQPKQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNIVKLKHCFFSTTEKDELYLNLVLEYVPETVYKASKHYIRMHQHMPMIYVQLYTYQICRALNYLHEVLGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFNDLRDPNARLPNGQPLPPLFNFTPQELANAPDELRQRLIPEHARS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi440g00040 447 Pfam Protein kinase domain 127 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi440g00040 447 SUPERFAMILY Protein kinase-like (PK-like) 133 429 IPR011009 -
Sebi440g00040 447 MobiDBLite consensus disorder prediction 1 58 - -
Sebi440g00040 447 Gene3D Phosphorylase Kinase; domain 1 122 197 - -
Sebi440g00040 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Sebi440g00040 447 MobiDBLite consensus disorder prediction 9 25 - -
Sebi440g00040 447 SMART serkin_6 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi440g00040 447 Gene3D Transferase(Phosphotransferase) domain 1 198 446 - -
Sebi440g00040 447 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi440g00040 447 CDD STKc_GSK3 134 405 IPR039192 -
Sebi440g00040 447 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 107 446 - -
Sebi440g00040 447 MobiDBLite consensus disorder prediction 26 58 - -
Sebi440g00040 447 FunFam Shaggy-related protein kinase kappa 198 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi440g00040 Sebi-Chr440 523276 527426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi440g00040 105 405 Core Cell Cycle Gene Families AT1G76540 32.686 5.00e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sebi440g00040 Pkinase 6.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi440g00040 K27414 - gmx:100811346 817.379