Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi440g00038 ATGAGTTTTGGGGGATTTCTAGACAACAACAACACGGGTGGTGGCGGTGTGAGAAACGTAGCAGATATTCCATACAGTAACGGAATCACTACCACCGACCACAACCACAACCACGATAGAATGCCCTTTGGTGCAATCTCTCAACCGCGTCTTGTCACTACTACTCCTATTCTAGCCAAATCCATGTTCAACTCCCCTGGCTTGTCTCTAGCACTTCAAACGAATATAGATGGGCAAGAAGATGGGAATAGATCAATGGCTGAGAATTTTGAGGCAAATGGTTTGAGAAGGAGCAGGGAAGAAGATCAAAGCAGATCTGGTAGTGATAACATGGATGGTATTTCCGGTGATGAACAAGATGCTGCCGACAAGCCTCCTAGAAAGAAGCGTTATCACCGACACACTCCTCAGCAGATACAAGAGCTTGAAGCGTTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGGCTGGAACTGAGCAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAGCGCCATGAGAACACGCTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCAATTAGGGAAGCTATGAGGAATCCCATGTGTTCCAATTGTGGTGGTCCAGCTATGATTGGTGAGATTTCACTAGAGGAACAACATCTTCGGATTGAGAATGCCCGGTTGAAGGATGAACTAGACCGAGTTTGTGCACTTGCTAACAAGTTTCTGGGTCGCCCCATTTCTTCATTGCCAAACTCAAGTTTGGAGCTTGGTGTTGGGGGCAATGGGTTTGGTGGGATGAGCACTACTGTGCCTGCAACATTACCTTTGGGGCCTGATTTTGGGGTGGGGATGTCAAATAACCCTTTAGCAATGGTGTCTCCTCCAACTAGACCAACACCTGTGGTGACTGGCTATGATAGATCAATAGAGAGGTCTATGTTTCTAGAGCTTGCTTTAGCTGCTATGGATGAGTTGGTGAAAATGGCACAGACTGAAGCTTCTAGAGAGACTGGGATGGTCATCATAAACAGCTTAGCACTTGTTGAGACTCTTATGGATGCGAATCGATGGGCAGAGATGTTTCCTTCTATTATTGCCAGAACCTCCACCACTGAAGTGATATCCAATGGAATAAACGGAACCAGAAATGGTGCACTTCAACTAATGCATGCGGAAGTTCATGTTATTTCACCTCTGGTTCCGGTTCGTGAGGTGAGTTTCCTGCGGTTTTGCAAGCAGCACGCAGAAGGGGTATGGGCTGTGGTTGATGTATCCATAGATACCATAAGAGAAAATTCCGGCGCGCCTAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGACGAAAGCCCAGTCCATCAGCTGTACAGGCCCTTGTTGAGTTCAGGTATGGGGTTCGGTGCCCAACGCTGGGTCACTACCCTACAACGCCAATGCGAGTGCCTTGCCATATTAATGTCCTCCGCAACACCCTCTCGAGACCACTCCGCAATAACTGCAAGTGGAAGGAGGAGCATGTTGAAGCTGGCACAACGCATGACGAACAACTTCTGTGCGGGTGTGTGCGCTTCTACGGTGCACAAATGGAACAAGTTGAATGCGGGGAACGTGGATGAAGACGTTAGGGTTATGACACGTAAGAGCGTGGATGATCCCGGTGAGCCACCGGGCATCGTGCTCAGCGCAGCCACATCCGTGTGGCTCCCTGTTTCGCCACAGAGACTCTTCGATTTCCTTCGTGACGAGAGGCTCCGAAGCGAGTGGGACATACTCTCTAATGGTGGTCCCATGCAAGAGATGGCCCACATCGCCAAGGGTCAAGACCATGGCAACTGCGTCTCTCTCTTAAGAGCCAGCGCTATGAATTCGAATCAGAGTAGCATGCTGATATTGCAGGAGACGTGCATAGACGCTGCCGGGTCGCTTGTGGTGTACGCGCCCGTGGATATTCCGGCCATGCACGTTGTCATGAACGGTGGTGATTCGGCTTACGTGGCGTTGCTGCCATCGGGGTTTGCCATTGTCCCTGATGGGCCTGGGTCGCGTGGGCTTGAGAATGGGCCCACTGCCAACGGAGGTGATAACGGTAATGGGCACGTGTGA 2214 0.4982 MSFGGFLDNNNTGGGGVRNVADIPYSNGITTTDHNHNHDRMPFGAISQPRLVTTTPILAKSMFNSPGLSLALQTNIDGQEDGNRSMAENFEANGLRRSREEDQSRSGSDNMDGISGDEQDAADKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALANKFLGRPISSLPNSSLELGVGGNGFGGMSTTVPATLPLGPDFGVGMSNNPLAMVSPPTRPTPVVTGYDRSIERSMFLELALAAMDELVKMAQTEASRETGMVIINSLALVETLMDANRWAEMFPSIIARTSTTEVISNGINGTRNGALQLMHAEVHVISPLVPVREVSFLRFCKQHAEGVWAVVDVSIDTIRENSGAPSFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESPVHQLYRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSATPSRDHSAITASGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGLENGPTANGGDNGNGHV 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi440g00038 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 346 722 IPR042160 -
Sebi440g00038 737 FunFam Homeobox-leucine zipper protein HDG1 115 201 - -
Sebi440g00038 737 ProSiteProfiles START domain profile. 348 521 IPR002913 GO:0008289
Sebi440g00038 737 SUPERFAMILY Bet v1-like 325 518 - -
Sebi440g00038 737 Gene3D - 359 515 IPR023393 -
Sebi440g00038 737 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Sebi440g00038 737 MobiDBLite consensus disorder prediction 93 107 - -
Sebi440g00038 737 Coils Coil 179 214 - -
Sebi440g00038 737 Gene3D - 114 201 - -
Sebi440g00038 737 CDD homeodomain 127 185 IPR001356 GO:0003677
Sebi440g00038 737 SMART START_1 321 518 IPR002913 GO:0008289
Sebi440g00038 737 SUPERFAMILY Bet v1-like 539 717 - -
Sebi440g00038 737 CDD START_ArGLABRA2_like 327 517 - -
Sebi440g00038 737 MobiDBLite consensus disorder prediction 90 135 - -
Sebi440g00038 737 Pfam START domain 345 518 IPR002913 GO:0008289
Sebi440g00038 737 Pfam Homeodomain 128 183 IPR001356 GO:0003677
Sebi440g00038 737 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Sebi440g00038 737 SUPERFAMILY Homeodomain-like 111 185 IPR009057 -
Sebi440g00038 737 MobiDBLite consensus disorder prediction 716 737 - -
Sebi440g00038 737 SMART HOX_1 126 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi440g00038 Sebi-Chr440 492403 497366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi440g00038 1 715 Homeobox Transcription Factor Family AT3G61150 62.141 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi440g00038 START 3.2e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi440g00038 K09338 - gmx:100811873 1232.24