Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi440g00016 ATGGGTTCAGATACCAATTTGGTGACTACAATCATTGGGTTTGGATTAAGTGCAACTTTCATTGTATTTGTCTGCACAAGAATAATTTGTGGAAGAATACGAGGGCGTGTGGGATCACGGTCTATGTATGAGCTTGAATCGAGAGCAGATATAGAACGGGCAGAATATCATGCTAATGACCCTGAACCTGCTTTTGTTGCTGCAATCCCCACATTGAATTTCAATCCAGAGGCCTTCAGTTCCATTGAGTGTACACAGTGTGTGATATGTTTGGCAGAGTACAAAGACAAAGAATTATTGCGCATCATACCTCATTGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACATGTCCTGTATGCCGTTTGCCATTGCACAATGTTTCTGAAACAAAACATGTGATGAGACCTGTAACATTTACCATCAACCAATCTCTTAGTGAGTCTAATACTTCAGAAAGGAACACAGGTAATGAGAGACAAGATGAACCTAATGCTAGTAACTCCATACAGATAACTTCTGAAGAACCAGAAGCAAGGCAGTGA 567 0.4021 MGSDTNLVTTIIGFGLSATFIVFVCTRIICGRIRGRVGSRSMYELESRADIERAEYHANDPEPAFVAAIPTLNFNPEAFSSIECTQCVICLAEYKDKELLRIIPHCGHTFHLSCIDIWLRKQSTCPVCRLPLHNVSETKHVMRPVTFTINQSLSESNTSERNTGNERQDEPNASNSIQITSEEPEARQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi440g00016 188 MobiDBLite consensus disorder prediction 168 188 - -
Sebi440g00016 188 SUPERFAMILY RING/U-box 86 136 - -
Sebi440g00016 188 CDD RING-H2_EL5-like 86 129 - -
Sebi440g00016 188 Pfam Ring finger domain 86 129 IPR001841 -
Sebi440g00016 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Sebi440g00016 188 MobiDBLite consensus disorder prediction 149 188 - -
Sebi440g00016 188 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Sebi440g00016 188 PANTHER OS11G0150450 PROTEIN 1 169 - -
Sebi440g00016 188 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi440g00016 Sebi-Chr440 138582 139844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi440g00016 85 178 C3H Transcription Factor Family AT4G10160 36.170 5.14e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi440g00016 - - ccaj:109802319 277.715