Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi440g00013 ATGGATATGAAGGTGGCAAGGAGAACTGAACGAATTGGGACAACATGTGTGTATTGGCTAGCTGGGAGGTGCAACAGAAAACCTTGCAAGTTTTTGCACGGGGAAACACCACTACCATCTACTTCTTATCATAATGCCTATGCTGCACATCCTTATCCAAGGAAGCGCCATTCCTCCTCTGAGAACACCACCCCTAAGTACAACTCAAAGACAGTGTTGATCAGAAAGAATGGATATGGGGGAGATGGGACACGTGTCACTGAGGCTTCTCAGAAGCCGTCGCTGACTATATGCAGATACTGGATGGATGGCAACTGCGTGCATGGTGACAAGTGCCGGCATTTACATTCATGGTTTTATGGTGATGGGTTTTCCACGTTAGCAAAGCTTCAAGAACACGAGAAGGTTGTCACTGGGATTGCATTTCCCCATGGATCAGACAAACTTTATTCTGGCAGCACTGATGGGACAATTCGGATATGGGACTGCCATACTGGTCATTGTGCTAATGTGATAAATCTTGGTACTGAAGTTACCTCTTTAATCCTTGAGGGCCCATGGATTTTTGTCGGTCTGCAGAATGCTGTTAAGGCTTGGAATATTCAGACTGCTTCAGAGTTAACTCTTGATGGACCCAAGGGGCGAGTCCTTGCCATGACTGTTGGCAATGATACACTTTTTGCTGCGGCAGAGGATGGCGTAATTTCTGCATGGAGAGGCAGCTCTTCTTCTAAGTCTCCTTTTGAACCGGTTGCGTCACTAAGTGGCCACACTAATGCTGTGGCCTGCCTGGCTGTTGGAGGCAAGATGCTGTTCTCAGGGTCCATGGACCAAAGCATAAGGGTTTGGGACCTTGATACATTAGAGTGTAAAATGACACTCAATGAACATACTGACAAAGTCACATCCCTTATTTGTTGGGACCATTATTTATTATCCAGTTCATCTGACTGCACTATTAAGGTCTGGGTTGCTACTGAAGAGGGAACTTTGGAAGTGACGTATACGCACACTCTGGAAAGTGGTGTTCTTGCACTTTGTGGGATGACTGATGCAGAAGCCAAGCCAATATTGTTTTGCTCATGCAGAGACAATTCAGTTCGCCTGTATGAATTGCCATCATTTTTAGAGAGGGGTCGATTATTTGCAAAACGAGAAGTCCGATCAATTGAGATTGGTTCCGGTGGGCTTTTCTTCACTGGGGACGGGACTGGTTTGGTGATGGTGTGGAAATGGTTGGAAGAGCCCAAGGTGACACCCTCTTGA 1266 0.4629 MDMKVARRTERIGTTCVYWLAGRCNRKPCKFLHGETPLPSTSYHNAYAAHPYPRKRHSSSENTTPKYNSKTVLIRKNGYGGDGTRVTEASQKPSLTICRYWMDGNCVHGDKCRHLHSWFYGDGFSTLAKLQEHEKVVTGIAFPHGSDKLYSGSTDGTIRIWDCHTGHCANVINLGTEVTSLILEGPWIFVGLQNAVKAWNIQTASELTLDGPKGRVLAMTVGNDTLFAAAEDGVISAWRGSSSSKSPFEPVASLSGHTNAVACLAVGGKMLFSGSMDQSIRVWDLDTLECKMTLNEHTDKVTSLICWDHYLLSSSSDCTIKVWVATEEGTLEVTYTHTLESGVLALCGMTDAEAKPILFCSCRDNSVRLYELPSFLERGRLFAKREVRSIEIGSGGLFFTGDGTGLVMVWKWLEEPKVTPS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi440g00013 421 PANTHER - 50 419 IPR044715 -
Sebi440g00013 421 ProSitePatterns Trp-Asp (WD) repeats signature. 271 285 IPR019775 -
Sebi440g00013 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 293 IPR001680 GO:0005515
Sebi440g00013 421 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Sebi440g00013 421 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Sebi440g00013 421 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Sebi440g00013 421 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Sebi440g00013 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 287 - -
Sebi440g00013 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 162 - -
Sebi440g00013 421 Gene3D - 11 117 - -
Sebi440g00013 421 Pfam WD domain, G-beta repeat 289 323 IPR001680 GO:0005515
Sebi440g00013 421 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Sebi440g00013 421 Pfam WD domain, G-beta repeat 126 162 IPR001680 GO:0005515
Sebi440g00013 421 ProSiteProfiles Zinc finger C3H1-type profile. 15 36 IPR000571 GO:0046872
Sebi440g00013 421 Gene3D - 118 242 IPR015943 GO:0005515
Sebi440g00013 421 SMART WD40_4 202 239 IPR001680 GO:0005515
Sebi440g00013 421 SMART WD40_4 287 324 IPR001680 GO:0005515
Sebi440g00013 421 SMART WD40_4 328 371 IPR001680 GO:0005515
Sebi440g00013 421 SMART WD40_4 123 162 IPR001680 GO:0005515
Sebi440g00013 421 SMART WD40_4 374 411 IPR001680 GO:0005515
Sebi440g00013 421 SMART WD40_4 247 284 IPR001680 GO:0005515
Sebi440g00013 421 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Sebi440g00013 421 SMART c3hfinal6 11 35 IPR000571 GO:0046872
Sebi440g00013 421 Gene3D - 243 419 IPR015943 GO:0005515
Sebi440g00013 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 323 IPR001680 GO:0005515
Sebi440g00013 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Sebi440g00013 421 SUPERFAMILY WD40 repeat-like 103 411 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi440g00013 Sebi-Chr440 101555 104089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi440g00013 86 339 Eukaryotic Initiation Factors Gene Family AT2G46290 22.222 1.04e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi440g00013 WD40 2.6e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi440g00013 - - gmx:100787799 634.409