Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi440g00004 ATGGGTCTTCACCTCCATATGGGGTGGAACACAACAGGAGGTGGTGGAGTATCTCAAACCAGTGATGATTCCAAGTATCCCCCTCATAGTTCTTCTGCTTACCCTCCTTTGGATGATCTCATGGGCAATGTTCGGCTGTCTGATTACCAGCCATCTGCACCTCCAGCATTGACACATTCCATTTCAGTTCCAAATCAAGACAAGAGAGAGGAGTTTCATGGTTATTATGCCAGTAACTCCTTCTCAGGTTGGGGAGCCACCTACTCTGGTCAGGGGGATCCTTCCAAACTTTCAGCTTATTCTGGCTCATTTAGTGAGTCAGTGCACAGTCAGAGTTTGCAGATTGTTCCATTGCAGAACAAAGGGTCTCTGAGAGTTTTGCTTCTGCATGGTAATTTAGATATATGGGTCCATGGAGCTAAAAATCTTCCAAATATGGACATGTTCCACAAAACCTTGGGGGATATGTTTGGTAGATTACCTGGTAATGTGAGCAACAAGATTGAGGGTACTGTGAGTAGGAAGGTTACTAGTGATCCCTATGTGTCAATTTCTGTATCAAATGCTGTAATTGGGAGGACTTTTGTGATTAGCAACAGTGAAAACCCTGTGTGGGAGCAACACTTCTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCATTTTGTTGTTAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGCACAGTGGCAATTCCAGTGGAACAAATATACTCAGGGGAAAGAGTACAAGGGACTTACCCTATCCTGAATAACAATGGGAAACCTTGTAAGAAAGGTGCTGTCTTGAGTTTATCCATTCAGTACACTCCAATGGAGAAACTGAGCATTTATCATCAAGGAGTTGGAGCAGGGCCAGAGTACATTGGGGTTCCTGGCACATATTTTCCATTGAGAAAAGGTGGAAATGTTACTCTATATCAAGATGCTCATGTTCCAGATGGCTGCCTCCCCGATGTGATTCTTGACCATGGGATGTATTTTGCTCATGGAAAGTGTTGGCATGATATCTTTGACGCCATACGTCAAGCTCAGCGTTTGGTTTACATTACAGGATGGTCAGTCTGGCACAAAGTTAGGTTGGTAAGGGATGCTGGTCGTGGATCAGATCTCACCCTGGGTGATCTTCTTAGGGCCAAGTCTCAGGAAGGAGTAAGGGTGCTTCTCCTTGTTTGGGATGACCCTACATCAAGAAGCATTCTCGGATATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGCCGATTTTTCAAGCACTCTTCTGTGCAAGTGCTGCTTTGTCCTCGTGTTGCTGGAAAACGGCATAGCTGGGTCAAGCAACAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATTGTAGCATTTGTTGGTGGACTTGATTTGTGTGACGGCCGATATGATACTCCCGACCATCCCCTCTTTAGGACACTGCAGACACTGCATAAGGATGACTATCACAACCCTACTTTCACGGGTAATGTTGGTGGCTGTCCACGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAACCTAAAGGGATAAATAAGTTGAAGGGCTCATCATATGATGATGCATTGCTCAGGCTAGAAAGAATCCAAGATATTATCAGTGCATCTGATCCTGTGAATGTTAGTGATGATAATCCTGAATCTTGGCATGTTCAGATATTTCGCTCAATTGATTCAAATTCTGTTAAGGGATTTCCAAAAGAACCAAAAGATGCATCAAGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGATCTTCATACAATTGGAGTCAAAATAAGGAACTTGGTGCTAATAATTTAATTCCAATGGAAATTGCACTGAAGATTGCTGAAAAGATAAAGGCAAATGAGAGATTTGCAGTATACATTGTTATTCCAATGTGGCCAGAGGGTGTTCCAACAGGGGCTGCCACCCAAAGGATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGCTGGGCTTGAAGCAACATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCTATAGATATGCATGAGAATATTGCTGTGTCTGGAACTGCTCCCCCAGCAAATAGTCCACAAGCAAATAGTCGAAATAGCCGACGTTTCATGATATATGTTCATTCAAAAGGCATGATAGTCGATGATGAATATGTGATTTTGGGGTCTGCAAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTCATCATACATGGGCAAGGAAACAGTCTTATCCACATGGACAGTTGCTTAAGACAGCTTTCTTAAAACATAATGGAAACCTGAGTAAGCAACAATAA 2601 0.4271 MGLHLHMGWNTTGGGGVSQTSDDSKYPPHSSSAYPPLDDLMGNVRLSDYQPSAPPALTHSISVPNQDKREEFHGYYASNSFSGWGATYSGQGDPSKLSAYSGSFSESVHSQSLQIVPLQNKGSLRVLLLHGNLDIWVHGAKNLPNMDMFHKTLGDMFGRLPGNVSNKIEGTVSRKVTSDPYVSISVSNAVIGRTFVISNSENPVWEQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGTVAIPVEQIYSGERVQGTYPILNNNGKPCKKGAVLSLSIQYTPMEKLSIYHQGVGAGPEYIGVPGTYFPLRKGGNVTLYQDAHVPDGCLPDVILDHGMYFAHGKCWHDIFDAIRQAQRLVYITGWSVWHKVRLVRDAGRGSDLTLGDLLRAKSQEGVRVLLLVWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRVAGKRHSWVKQQEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPDHPLFRTLQTLHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGINKLKGSSYDDALLRLERIQDIISASDPVNVSDDNPESWHVQIFRSIDSNSVKGFPKEPKDASSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQNKELGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEAGLEATFSPQDYLNFFCLGNREAIDMHENIAVSGTAPPANSPQANSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHHTWARKQSYPHGQLLKTAFLKHNGNLSKQQ 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi440g00004 866 PIRSF PLD_plant 118 855 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Sebi440g00004 866 FunFam Phospholipase D delta 126 273 - -
Sebi440g00004 866 Pfam C2 domain 131 257 IPR000008 -
Sebi440g00004 866 SMART pld_4 456 491 IPR001736 GO:0003824
Sebi440g00004 866 SMART pld_4 792 819 IPR001736 GO:0003824
Sebi440g00004 866 PANTHER PHOSPHOLIPASE D 121 847 IPR015679 -
Sebi440g00004 866 MobiDBLite consensus disorder prediction 9 37 - -
Sebi440g00004 866 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 129 279 IPR035892 -
Sebi440g00004 866 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 456 491 IPR001736 GO:0003824
Sebi440g00004 866 Gene3D Endonuclease Chain A 604 849 - -
Sebi440g00004 866 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 792 819 IPR001736 GO:0003824
Sebi440g00004 866 Gene3D C2 domain 126 270 IPR035892 -
Sebi440g00004 866 FunFam Phospholipase D 605 838 - -
Sebi440g00004 866 CDD C2_plant_PLD 126 278 - -
Sebi440g00004 866 Gene3D Endonuclease Chain A 335 576 - -
Sebi440g00004 866 FunFam Phospholipase D delta 332 571 - -
Sebi440g00004 866 SUPERFAMILY Phospholipase D/nuclease 615 828 - -
Sebi440g00004 866 ProSiteProfiles C2 domain profile. 109 255 IPR000008 -
Sebi440g00004 866 MobiDBLite consensus disorder prediction 12 28 - -
Sebi440g00004 866 Pfam Phospholipase D Active site motif 457 491 IPR001736 GO:0003824
Sebi440g00004 866 Pfam Phospholipase D Active site motif 793 819 IPR001736 GO:0003824
Sebi440g00004 866 SUPERFAMILY Phospholipase D/nuclease 341 556 - -
Sebi440g00004 866 SMART C2_3c 132 254 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi440g00004 Sebi-Chr440 48534 56631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi440g00004 11 850 Phospholipase D Gene Family (Wang group) AT2G42010 73.708 0.0 1297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi440g00004 K01115 - gmx:100791059 1459.89