Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi43g00065 ATGGCTACTGCAAGGGACAGTGAAGGATGTGTTTCTCCCCATGAGTTCGTCAAGGCTTACTCTGCTCACCTCAAGCGATCTGGCAAGATGGAGCTTCCTGAATGGACAGACATTGTGAAGACTGCAAGATTAAGGAGTTGGCTCCTTATGATCCAGATTGGTACTATGTTAGAGCTGAGAATTTATGGTGGGAGCAAGAGGAATGGTAGTCGCCCACCTCATTTCTGTAAGAGCAGTGGTGCTATTGCTCGTCACATTCTCCAACAGTTGCAGAACATGAGCATCATTGAACTGGACACCAAGGGTGGCAGGAGAATCACTTCCAGTGGTCGTCGGGATCTTGACCAAGTGGCTGGACGGATTTGTAGTTGCACCTTGATCTGTAAACTGCTGAGGACTACTAGCCAGCTGCATAAGCTTCTAGGTTTTGGGTTCTTGGAGAGATGCGACGACAACAGATTTATGTGCAATTTTGATTTAGATGCCGAGTTGCCTTTTTTTATGTTTTGGACTATCAATGCTATGCTGCTTTGGATGATCTTTTGA 546 0.4597 MATARDSEGCVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARLRSWLLMIQIGTMLELRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIIELDTKGGRRITSSGRRDLDQVAGRICSCTLICKLLRTTSQLHKLLGFGFLERCDDNRFMCNFDLDAELPFFMFWTINAMLLWMIF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi43g00065 181 ProSitePatterns Ribosomal protein S19e signature. 72 91 IPR018277 GO:0003735|GO:0005840|GO:0006412
Sebi43g00065 181 Gene3D - 9 44 IPR036388 -
Sebi43g00065 181 PANTHER 40S RIBOSOMAL PROTEIN S19 11 124 IPR001266 GO:0003735|GO:0005840|GO:0006412
Sebi43g00065 181 SMART Ribosomal_S19e_2 3 124 IPR001266 GO:0003735|GO:0005840|GO:0006412
Sebi43g00065 181 SUPERFAMILY "Winged helix" DNA-binding domain 11 122 IPR036390 -
Sebi43g00065 181 Pfam Ribosomal protein S19e 45 121 IPR001266 GO:0003735|GO:0005840|GO:0006412
Sebi43g00065 181 Gene3D - 45 126 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi43g00065 Sebi-Chr43 2268171 2269908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi43g00065 1 123 Cytoplasmic Ribosomal Protein Gene Family AT5G15520 64.085 3.56e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi43g00065 K02966 - gmx:100305587 181.8