Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi43g00051 ATGTCGCAAAACAACTCTTGGAATAAAAGAAAAACCTGCAGCCATATCGACTATGAGGATTTTACCGAGGAAGAATATGAAGTATGCGAATCTCTTCTTTCTTTGAAAGGAGATACTCAAGATCAAGAGGAGCATGAGGAATCCCCTACAAAAGAATATAAAGTAAGTGAAGCTCTTCTTTCTTTAGAAACAAGTCAAGAGAAGAAGAAGCATAAATTGAATGAAGCTGATCATAATGCCATAAAGGGTTGCAAGAAAATCCTGATAACCAACATTCATGAAGAAGTACAGAATCTTGATGTCATGAATGATGGCAATTTACCACCAGTTCTTGGGCTTAGGAACTATATTTCTGGGTGCGGTATGCCTTTTGAGAAGCAACTGACAAAAAGCGATTTGAGGGTAGATCAAAATAGATTGTTGCTGAACAAAAATCATGTGGAAACATCTTTCTTACCCTTGTTGAGAGAAGATGAAAGCATTAAGGAAGGGATAGAAGTCATTGCCTATAATATGGATGGCAATATGTTTACCATGACATTCAAGATTTGGGCAGATAAGTACTATGTGCTTATGGGAGGGTGGAAAGCTTTCTTCCAAGCACACACATTGCAAATTCAAGATTATGTCAAAGTGTGGATGTTTCGTCATTCGGAAACCAACAAGCTAAACCAACAAGCTATGTTTTGCTCTTAG 696 0.375 MSQNNSWNKRKTCSHIDYEDFTEEEYEVCESLLSLKGDTQDQEEHEESPTKEYKVSEALLSLETSQEKKKHKLNEADHNAIKGCKKILITNIHEEVQNLDVMNDGNLPPVLGLRNYISGCGMPFEKQLTKSDLRVDQNRLLLNKNHVETSFLPLLREDESIKEGIEVIAYNMDGNMFTMTFKIWADKYYVLMGGWKAFFQAHTLQIQDYVKVWMFRHSETNKLNQQAMFCS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi43g00051 231 MobiDBLite consensus disorder prediction 37 52 - -
Sebi43g00051 231 MobiDBLite consensus disorder prediction 33 52 - -
Sebi43g00051 231 Gene3D - 118 228 IPR015300 -
Sebi43g00051 231 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 37 223 IPR005508 GO:0003677
Sebi43g00051 231 CDD B3_DNA 124 221 IPR003340 GO:0003677
Sebi43g00051 231 Pfam B3 DNA binding domain 124 214 IPR003340 GO:0003677
Sebi43g00051 231 SUPERFAMILY DNA-binding pseudobarrel domain 124 220 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi43g00051 Sebi-Chr43 1645862 1646557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi43g00051 63 223 B3 DNA Binding Superfamily AT4G03170 35.088 1.16e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi43g00051 B3 1.3e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi43g00051 - - tpra:123915381 156.762