Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi43g00042 ATGAAATTTGGATTCATTGTCTTAGCAAGAATAGAAAATTCACTCTATACAGAGGGAAGCTCAATTGATTCTTTTCGTGTGTCTGACTTTGATCAATCAGTTGGATATCGCTTAGAGGATGCTGCTGACTTGAGTGCAAACTCAGTTTTTAACTCCCTAACAGTAAGTAACCAAACAATTGCTCGTGGTCCTGTTCACATTGGTTCTTTTGACAAGTTGCCAACTTCACTTGATAAAAGCCTATTGACGAACCAAATAGAGCGACAGAGCTTGCAATTACATAAGGTTCAATCATCAAATCCGGTCACCATATTAAGTGATAATACAGAAAACCAGGAAGAGTCTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGACGTTGACACTGATGATAAGAATCCGTGGTTTGAAAGAAGTCAGTCCCTTGCTGCCGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAAAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAAGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTTCAACAGTTGGAAAGTAGTCGTTTGAAGTTGACTCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATCTTTATATCAAATGCAGGTGATCAATCACATTCCATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTAGAAGAGCAGAATCGGCAAATTAATGAACTAAGAGCAGCTGTAAATTCTCATGCAAGTGATACAGAACTCCGCATGATTATTGATGGTGTATTGGCACATTATGATGAGATATTTAGGCTGAAGGGCATTGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACGCCAGCTGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGATCATCTGAACTCCTCAAGCTCCTGGTAAATCAATTGGAACCTCTCACAGAGCAGCAGCTAGTGGGTATTACCAATTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAAACATTGTCCACTGGATCACTGGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCAATGGGTAAGCTAGGAACACTTGAGGGGTTTATTCGACAGGCTGACAATTTGCGCCAGCAAACGCTGCAACAAATTCACCGTATATTGACAACTCGCCAATCGGCTCGGGCACTCCTGGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCCCTTTGGCTTGCTCGCCCAAGAGATTGA 1347 0.4402 MKFGFIVLARIENSLYTEGSSIDSFRVSDFDQSVGYRLEDAADLSANSVFNSLTVSNQTIARGPVHIGSFDKLPTSLDKSLLTNQIERQSLQLHKVQSSNPVTILSDNTENQEESAMADASPRTDISTDVDTDDKNPWFERSQSLAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNAGDQSHSMSGNGAMAFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIIDGVLAHYDEIFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi43g00042 448 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700|GO:0006355
Sebi43g00042 448 Pfam bZIP transcription factor 163 203 IPR004827 GO:0003700|GO:0006355
Sebi43g00042 448 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 205 IPR004827 GO:0003700|GO:0006355
Sebi43g00042 448 SUPERFAMILY Leucine zipper domain 163 206 IPR046347 GO:0003700|GO:0006355
Sebi43g00042 448 PANTHER TRANSCRIPTION FACTOR TGA9 96 447 - -
Sebi43g00042 448 Coils Coil 182 209 - -
Sebi43g00042 448 ProSiteProfiles DOG1 domain profile. 228 445 IPR025422 GO:0006351|GO:0043565
Sebi43g00042 448 MobiDBLite consensus disorder prediction 102 165 - -
Sebi43g00042 448 Pfam Seed dormancy control 245 320 IPR025422 GO:0006351|GO:0043565
Sebi43g00042 448 Coils Coil 239 259 - -
Sebi43g00042 448 Gene3D - 162 214 - -
Sebi43g00042 448 SMART brlzneu 159 222 IPR004827 GO:0003700|GO:0006355
Sebi43g00042 448 CDD bZIP_HBP1b-like 163 214 - -
Sebi43g00042 448 MobiDBLite consensus disorder prediction 102 122 - -
Sebi43g00042 448 FunFam BZIP family transcription factor 162 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi43g00042 Sebi-Chr43 1231844 1240834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi43g00042 117 448 bZIP Transcription Factor Family AT3G12250 78.916 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi43g00042 DOG1 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi43g00042 K14431 - gmx:100816123 680.633