Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi43g00026 ATGGACGAAGCTGAAGAAATACCTAAGCACAAAGATATTAGACGCTATTTCTGTGAATATTGCGGCATCTGCAGATCCAAAAAAATCCTAATCACTTCTCACATCAATACATACCACAAGGAGGAGGTGGAAAAGGCAAGAGTTGAAAGAGATCCTGAAGCAGAGGGTGTAAAATCCAACACTTGTGAGGAATGTGGTGCTAGTTTCAAAAAACATGCCTACTTGTTACAGCACATGCAAAGTCATTCCCTTGAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAATCACGCTCCGTTCAAAATGAGGTTGGCAGTTTGTTCACCTGTGTCTTCTTCTTGTCATAAGATCAATAGGCCATATGTGTGTACTGTCAATGATTGTCAGTCAAGTTACAGAAGAAAGGACCACCTGACTCGTCACCTTCTACTGCATCAAGGGAAGACTTTCACATGTCCTGTTGAGAATTGCAACCTTGAATTCTCTCTCCAAAGCAATTTGAAAAGACATTTCAACGAGTTCCATGATGAAAATTCTAACCCTAGTAATGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAATCGGCTGTGGAAAGGTTTTCAGATTTGCATCAAAGCTACAAAAGCATGAAGATTCTCATGTTAAGCTAGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTTAGGGCCCATGTTAACTCCTGCCATCAATATGTGACCTGTGATACTTGTGGGACAAAGCAACTGAAGAAGAATATTAAACGGCACCTCCGCACACATGAAGCTGGCAGTTCATCAGAGGCATTTCAATGTGAATTTAAGGGTTGTGGCTGCACATTCTCAAGTAAATCTAATCTTCATAAGCATGAGAAGGCTGTGCACTTCAAAGAAAAACCTTTTGTGTGTGGGTTTCCTGATTGTGGAATGAGATTTGCTTACAAACACGTGAGAGATAAACACGAAAAAACTGGCAAACACGTTTTTACCCTTGGTGATTTTGAAGAAGCCGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGAAGAAGAGAACGTGTCCTACTGTTGAAATGTTAGTTAGAAAGAGAGTTACCCCACCTAGTCAATTGGAGAACTGGTTGCTCATGCAGGATAGTGACTAA 1182 0.4205 MDEAEEIPKHKDIRRYFCEYCGICRSKKILITSHINTYHKEEVEKARVERDPEAEGVKSNTCEECGASFKKHAYLLQHMQSHSLEVGRPPVKLHQGCLNHAPFKMRLAVCSPVSSSCHKINRPYVCTVNDCQSSYRRKDHLTRHLLLHQGKTFTCPVENCNLEFSLQSNLKRHFNEFHDENSNPSNVESQKQYVCPEIGCGKVFRFASKLQKHEDSHVKLESVDVVCLEPGCMKHFTNAQCLRAHVNSCHQYVTCDTCGTKQLKKNIKRHLRTHEAGSSSEAFQCEFKGCGCTFSSKSNLHKHEKAVHFKEKPFVCGFPDCGMRFAYKHVRDKHEKTGKHVFTLGDFEEADEQFRSRPRGGKKRTCPTVEMLVRKRVTPPSQLENWLLMQDSD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi43g00026 393 SUPERFAMILY beta-beta-alpha zinc fingers 14 82 IPR036236 -
Sebi43g00026 393 ProSitePatterns Zinc finger C2H2 type domain signature. 155 178 IPR013087 -
Sebi43g00026 393 ProSitePatterns Zinc finger C2H2 type domain signature. 227 250 IPR013087 -
Sebi43g00026 393 ProSitePatterns Zinc finger C2H2 type domain signature. 126 148 IPR013087 -
Sebi43g00026 393 PANTHER ZINC FINGER PROTEIN 9 383 - -
Sebi43g00026 393 Gene3D Classic Zinc Finger 151 179 - -
Sebi43g00026 393 ProSitePatterns Zinc finger C2H2 type domain signature. 316 340 IPR013087 -
Sebi43g00026 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 153 IPR013087 -
Sebi43g00026 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 283 313 IPR013087 -
Sebi43g00026 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Sebi43g00026 393 Gene3D Classic Zinc Finger 253 310 - -
Sebi43g00026 393 SUPERFAMILY beta-beta-alpha zinc fingers 264 319 IPR036236 -
Sebi43g00026 393 ProSitePatterns Zinc finger C2H2 type domain signature. 195 217 IPR013087 -
Sebi43g00026 393 Gene3D Classic Zinc Finger 1 87 - -
Sebi43g00026 393 ProSitePatterns Zinc finger C2H2 type domain signature. 285 308 IPR013087 -
Sebi43g00026 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 183 IPR013087 -
Sebi43g00026 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 222 IPR013087 -
Sebi43g00026 393 SUPERFAMILY beta-beta-alpha zinc fingers 118 150 IPR036236 -
Sebi43g00026 393 FunFam Zinc finger 45-like 56 83 - -
Sebi43g00026 393 Gene3D Classic Zinc Finger 122 150 - -
Sebi43g00026 393 Pfam Zinc finger, C2H2 type 61 82 IPR013087 -
Sebi43g00026 393 Pfam Zinc finger, C2H2 type 153 178 IPR013087 -
Sebi43g00026 393 Pfam Zinc finger, C2H2 type 124 148 IPR013087 -
Sebi43g00026 393 Pfam Zinc finger, C2H2 type 283 308 IPR013087 -
Sebi43g00026 393 Pfam Zinc finger, C2H2 type 193 217 IPR013087 -
Sebi43g00026 393 SUPERFAMILY beta-beta-alpha zinc fingers 190 217 IPR036236 -
Sebi43g00026 393 Gene3D Classic Zinc Finger 180 252 - -
Sebi43g00026 393 Gene3D Classic Zinc Finger 311 337 - -
Sebi43g00026 393 SMART c2h2final6 283 308 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 253 274 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 193 217 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 314 340 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 16 39 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 225 250 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 60 82 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 153 178 IPR013087 -
Sebi43g00026 393 SMART c2h2final6 124 148 IPR013087 -
Sebi43g00026 393 SUPERFAMILY beta-beta-alpha zinc fingers 151 179 IPR036236 -
Sebi43g00026 393 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi43g00026 Sebi-Chr43 589839 592256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi43g00026 122 343 C2H2 Transcription Factor Family AT1G72050 50.365 3.08e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi43g00026 zf-C2H2 0.0073 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi43g00026 K09191 - gmx:100801812 609.757