Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi438g00061 ATGGGAAACAATTGTGTTGGATCAAGAGTCTCAAAAGATGGACTAATTCCTTCTGTTCTTCCAAGTTCATTCTGGTGGTCACAGCCAACTAGTGGAATAGTAATCAATGGTGCATCTTCACCTGACAAAGAGGCTAATAAGAAGCCTTCAGAGGAACAAATAAGGCACGTGGAAATGGAGCATGCTAGAGTAGCCCCAAAGATGCACCATAAGAAGAGGCTAGCAGTAGCAACTGCTGGGCTTCAAGCAGAGTCAGTTTTGCTGACAAAGAGTGGTCATTTTAAGGAGTACTATAATTTAGGACTTGAACTTGGGAAAGGACAATATGGAACTACTTCCCTTTGCTTGGAGAAAGCTACTGGGAAAAAGTATGCCTGCAAGTCCATCCCAAAGGTGAAATTGGTGAGACATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCGGGTAGTCCAAATGTGATCTCAATTAAAGGGGCTTATGAGGATGCTGTTGCAGTTCATGTTGTCATGGAATTATGTTCAGGGGGTGAGTTGTTTGATAGGATTGTGGAAAGGGGGCATTACACAGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTCATAGAGTCTTGCCATTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGGGCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGACATTTTTAGTGACGTGGTAGGGAGTCCTTATTATATTGCACCTGAAGTTCTACGCAAGCGTTATGGACCAGAAGCTGATGTATGGAGTGCAGGTGTTATCATATACATTCTCTTAAGTGGAATGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGAGGTTTTGTATGGCGATCTTGATTTCTCTTCAGATCCTTGGCCAAATATCTCTGGAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGTTAACAGCACATGAAGTTCTTTGCCACCCTTGGATTCAGGTTGATGGAGTTGCTCCGGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTTAAGCAGTTTTCAGCAATGAGCAAGCTCAAGAAGATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTACTGGATTGAAAGAAATGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTTGAAAAACTCAAGAATGGGCTGAAAATGTTTGGTGCTAATCTCAGTGAATCTGAAATTTTCGATCTAATGCAAGCTCTTCAACAAGCTTGTGAAGAATTTGGCATGGAGGATGTTCTCTTGGAGGAATTGATCCAAGAAGCTGATCAGAATCATGATGGCCGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGAAATGCAGATTTAGGTAGGAGTGGTCTAAAGGGTAACACTAGTTTTAGCTTTGGATTTAGGGAGGCTCTATCAGTATGCTAA 1545 0.4168 MGNNCVGSRVSKDGLIPSVLPSSFWWSQPTSGIVINGASSPDKEANKKPSEEQIRHVEMEHARVAPKMHHKKRLAVATAGLQAESVLLTKSGHFKEYYNLGLELGKGQYGTTSLCLEKATGKKYACKSIPKVKLVRHDDVEDVRREIQIMHHLAGSPNVISIKGAYEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVSVIESCHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKPGDIFSDVVGSPYYIAPEVLRKRYGPEADVWSAGVIIYILLSGMPPFWGESEQEIFEEVLYGDLDFSSDPWPNISGSAKDLVRKMLVRDPRKRLTAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMSKLKKMALRVIAENLSEEEITGLKEMFKMIDTDNSGQITFEKLKNGLKMFGANLSESEIFDLMQALQQACEEFGMEDVLLEELIQEADQNHDGRIDYNEFVAMMQRGNADLGRSGLKGNTSFSFGFREALSVC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi438g00061 514 Pfam EF-hand domain pair 404 486 IPR002048 GO:0005509
Sebi438g00061 514 CDD STKc_CAMK 98 355 - -
Sebi438g00061 514 SUPERFAMILY Protein kinase-like (PK-like) 96 357 IPR011009 -
Sebi438g00061 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 87 458 - -
Sebi438g00061 514 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Sebi438g00061 514 Gene3D Transferase(Phosphotransferase) domain 1 184 361 - -
Sebi438g00061 514 Gene3D - 448 510 - -
Sebi438g00061 514 ProSiteProfiles Protein kinase domain profile. 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi438g00061 514 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Sebi438g00061 514 SMART efh_1 403 431 IPR002048 GO:0005509
Sebi438g00061 514 SMART efh_1 460 488 IPR002048 GO:0005509
Sebi438g00061 514 Pfam Protein kinase domain 100 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi438g00061 514 SMART serkin_6 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi438g00061 514 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Sebi438g00061 514 SUPERFAMILY EF-hand 384 488 IPR011992 -
Sebi438g00061 514 Gene3D Phosphorylase Kinase; domain 1 101 183 - -
Sebi438g00061 514 FunFam Calcium-dependent protein kinase SK5 184 368 - -
Sebi438g00061 514 FunFam Calcium-dependent protein kinase 1 100 183 - -
Sebi438g00061 514 Gene3D - 363 447 - -
Sebi438g00061 514 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Sebi438g00061 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Sebi438g00061 514 CDD EFh 404 486 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi438g00061 Sebi-Chr438 769009 772479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi438g00061 70 508 EF-hand Containing Proteins AT5G04870 68.852 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi438g00061 Pkinase 1.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi438g00061 K13412 - gmx:100814475 691.034